RNA id: XM_043221479.1


Basic Information

Item Value
RNA id XM_043221479.1
length 5664
RNA type mRNA
GC content 0.50
exon number 22
gene id tsc1b
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3617039 ~ 3634175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGTCCGGATACAGGCGTGTTTTTGAGCGCTCTGGGATTATTTCTCCTGCACAGCTGCGGAGGGTGACTGCGCAGGGAGGGTTGTGAGGTGTTCAAGATGGCGGCGCCCTGTGGAGTGCAGTTGCTCTAACAGTGGTGCCTGGAGACTGTATTGATGGGTGGCCCAGGGACCCCTCCAGGCTGGACAGGACACGGGACGGCGTGAGAGTGACATCTAAGAGTCCTTCCCCTGTCCCTAGACTGTTTTAGAGACACCCGCCTCCGAACCCTCCATACCACCATGTCCAGGGAACAGCTCAGCGTGGGGGACCTGCTTCCTCTGCTGGAGACCTCTGACCTCCGCCAGCTGGATGAGATCAAAGGCCTCATCAATGAACACCTCAACACAGATCGAGGGTCCATGCTGCTGAACGGCTTGGTGGACTATTTCCTGGAGACCAATTCCGCCCAGGCAGTGCACATCCTGTCCTCAGTGAGGGAGCCACATGATAAGCACCTTtttgataaaatgaatgaatgcatggcTAAAGCCCCCTGTCGCCTGCCCACACTCACTCTTCTGGGGCACGTTGTCCGTAAGCAGCCATCTTGGATCCACAAGATTGCTCGCTATCCGCTGCTGCTATCTCTCCTGAAATGCCTCAAGACAGACACCGATGTTGTGGTTCTTATAACTGGAGTCCTTGTGCTCATCACACTATTACCCATGATTCCCCAAGCTGGCAAGCAGCATCTCTATGAATTTTTTGATATCTTTGGCCGTCTGGCTTCTTGGAACCTGAGAAACCCAGGACACGTCCCAGAGGTTTATCTCATCCACCTGCATGCAAGCGTCTACTCTCTCTTCCACCGGCTGTATGGGATGTATCCCTGCAATTTTGTGTCTTACTTGCGCTCCCATTACAGCATGAAGGAAAACATGGATACTTTTGAGGAGGTGGTCAAGccCATGCTTGAACATGTGAGAATACATCCCGAATTAGTGACTGGAACCAAGGACCATGAACTAGACCCCAGTCGGTGGAAGAAATTTGAAATCCACGATATCGTTATTGAGTGTGCCAAAGTCTCTCTGGACCCAAAGGAGGCGTCCTGCGAAGAGGGCTATGCCAGCATGCCTGAGCATTTCTGTGCTCATCTACAACAACGTCCGGCTGATTGCACTGCCAGCCCTTACGGCGACTTCCACAGTAGCTACGGAAGTTCTTCCTCGACTCATTTCTCAACCCCTCGTCAGCCTGTCGTCCCTCCCTTGGCCCTGTCCTCTTTCTCAGGGACTCAGCCCCCCTATCGCAGTCCTACTGGAACCCGTCGACAGaacTCCAGCTGTGAATTTAATGCCACATATGGTTTTAAGGATTCCCTCTGGAGCCCCTCCTCTCAGTGTGGCATGGCCACACCTCCTTCCTCCCGTGGGATGTCACCGAATCCGGAAGTGTCCCAGAGTGCCTCTCACCTACCAACCCGCCTCTACAGCACACCTGGTGGTAAAGGCACCCCGTCCTCTAGCACCCCTGCGGCCGCCTCACCTCCTCCTAGCCTCTCTGATGAGTTTCTCCCTGTGTCTCTGCCTTGCAGTACCGCCAGTCCACCATGCAAGGATGGTAGACCTTTAGACCACACCAAACCCATCTTGGTCAGACAGGAGCCAGTCAGACAGGAGCTAGAAAGAGAGTTTGAGAAAACTGGACCTGAAACCATCAATCACAGAGATGAGAGAGGTGAGAACATGCCCATGACCCTGACCGAGCTGTCTGTGTACATGAAGGAGCAAGAACAACTGAGGATCGAGAAAGAGCGCGAGGACGCTGCCATTACAGAGGAGCTTCTGAAGTTAACAGAGGAAAAGCGGGATTTAGCTGGCCTTCGTGGCTTTGACTCTCCATTCTTCAGCACCACAGAGACCCTGACCGGAGCGCAAGAGAAACCCCTTCCTTCTTCTATCCTAGGCAGCTCAATTAGAGACCCTCACAACATGATCTCCACACCTGACAAGGCCGAGATCACGGCCAGCGACAGAGGCAGAGTCAGCAGAGGCCCATCCCAGGAGCATCCCTGGAACTTCCGGCCAGTGTTTATGCCCATCGAACACCCAACACACAGCCACCTCCATCGGAGCCCCTCCGCACCTGAGGACGAGGCccttaaatacagtttttgctCCCCGAGCCCAAGCAAGCCCCCACCCCTTGCCTACGAGGCTCTGTTTGACCTGGCCCTGCCTCGGGCAGCCTCTCTCTTCGTGGGGAGGAAAACCTCGGAGATTGTGCAGCGAGTAGCCTTGGAGAGGATCCAGAGAGGTGATGTGAGCAAGCAAGTGGAGGAGGGGTGTGTTGAGGGGGCTGTGTCTGCCTCACCTTTGGAGGTGCTAGATCGCCTCGTGCAGCAGGGCGGTGACGCCCATGACAAAGTGTTAAAAAGATTGCCTCTGCCAAGCAAGTCAGCTGACTGGACACACTTTGGAGGCTCTGCTCCTCTGGATGAGCTGCACACACTGCGCAGTCAGCTGCTTCTGTTACACAACCAGCTCTTATACGAGCGCTACAAGCGGGAGCAGCACGCCGTACGCAACCGACGTCTGCTTCGTCGAATCATCAATGCCACCGCGCTCGAGGAGCAGAATAACGCCATGaAGGACCAGCTGAACCTGCAGAGTGTGGATATCATGTCTTTGAGAGAGAGCCTGCAGGTAGAGCAGCAGAGATACCGGCAGCTCTGGGACGACCGAGAGACTGTAGTTACACGCCTGCACAGCCAGATACGCCAGCTACAACAGGCCAGAGATGACTACTACACCAAAAACCAGGAGTTACAGAGTAAACTACAGGAATGCCAGAAGCGAATAGGTGAGATGGAGGCGGAGCTGCAGAAGGCGAACAACAAAGTGTGCCACACAGGACACCTGCTAAATCAGCTTACTGCCAAGTTGTCATCGAGTGAAAGTATTCAGCAGCAGTTGAGTTTTCTAAACAAGCAGCTGCTGCTGCTAGGAGAAGCCCATAAACTGTGTGTTCAAGAGCTGCATCAGGCTGGACCAGATACTAGCAAGGAGGTCCAGATGCTGCAGACATCCTGGGGGAAGGAGACGGAGCGTCTAAAGCAGAATCTGTTACTTCAGAGCCAAAAGCTGGATGCTGCTCAGCAGAGAGTGGCAGAGCTAGAGACTCAACTCGCTAAGAAAGAGCACCTAATTGCAGAGCAAAAAAAGTTTCTAGAAGATGTCAAGGCTCAGGCTAAAGGGGAACTGCAGGCCTCCGAGAGCAGATATCAGGCACAGAGGCGAGTGACTCTGGCTCTGCAGACTGAGCTTCTGCAACTCTACAGCAGGCTGGAAACAGAGGACTCCTCTGGCACTGCTTCAGCCTTACCAGCAGAGAGCGCCACTGAACCCCGCAGTTCCCCCGAGCCCagTGTCATAGTGGTTGATGGTGCAGTAAAAACAGCCACCAAAGAAGACGGCAAGTCACCTCAGTCTCCACATGGCAATGGCAGCACCTTATCGCCAGCACAGCCAAGGCCAAGCAAGGCCAGCTCCTCCCCGGCCAACTCTGTAAACGGCAATCGAGACACTCCACCACCTGTCCTAGTGGAACCGCCCCCTCACCGTCCTCATTCCCCGCTGGGACCCCCAGGACCTTTGGTCCCGTCTGACACCCCACTCACTGTAGGCTCCTACCCCAGCGCCAAGAGCTTTCTGGGTATGCGTGCAAGAGAGCTATTTCGCAACAAAAGCGAGAGCCAGTGCGATGAGGATGAAGCCCCGCCCCCCCGTCTCACTGGCCTATCACAGGGTCTGAAAACTGAGCTCTGCGTGGAGCCGACAGCGAAGAGTACATCCAGCTCCACCACTGCGCAGAGCTTCACGCTCATCACATCCGCAAAAGAAACCCAACCTGATGCTCAGAGAGCCAAAAACCGAGACACGTTCGGGTCAAGATGCCCAGAGAGGCCCAGGCAGCAACCGTTAAGGATCATGGACTATAACAAAAGTCATCAGGAGCACAGCTAAAGTTATggaaaaatggagaaaaagagtGGTAGAGGGTCGAGAGATTGCAAATTTAGAATATTAGAGCGCAAGGCAAGACTCTTTCAATTTTCAGTGTTATCTGTCCCATTTCCACAAGCCGACAACAGGATTTGGAGTTAATAAATCAGTAAAACCCTCACTAAGATGGGACGAGTAAAAAGAATAGACTAAACCAACATATAAGTGGTCACAAAATGTCTTCTAGCAACCCCACTGCGTTGTTCACCAGAAATGTCACCGCTGcatctttttatttgttgttttttgctcatttatctGCTCCCTTTAACCAAGTTGTTGCAGCTCGTGGAAACTTTGCATTTATGTTGTTAGAAGCAATATAAGTTGATTTGATTTGTAGTGATGGTACAATGCTTACACCCTCACAGCTCACCCGCACAGAGCTGAAGTGTGTGCTTGGATGCCAGGAGGTGGATGGTTGTCTTGTGCCAAGCAGAAGtcagtgtttctttttaaaaccatCAGGTTTTACCTTTCAGACATGTCAGGTGCATTTATATGTGCTCAAATCATGTTTCTGTActatttttctgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgagagagaaagtgatgGCCTGTATCCCAGACTTTTTTCTGGGTTAAATTGCACTGTAAGTTGTTACTGATTACGGAAAAAAATCTGTTACAGTCTTGGACTAGACTAAATCTGGATCCGAGAGATGATGCAGCCACAACGAGAGGAAGGTTcaacgtgttttttttaatatatttttttaattatttattttttcgtcctcttcttctttttagattttcaagTATTACCAGTTCTTTTAAAAGCTGTAAAGCAACGTAAACGAACAGCGGCCATAGATTCCTGACCATTACCCACGAGTCAAACCTATGAATCCTATCCTTCAGTAATCTCTATAAAACATCTAGTTACTATTTTCGAAGCCTTATCTTAATAATAAGTCAGACATCAGTCAAGTAATTTGCTTTAACGATACTAACCTTCAGTCTCAAGCTCAGTCATATTTTGCTGAAAACACGGTAGGACACGGTGATCTGTATTTTACCCTCTGCTTTCTCAGTGCCAAATACCCGATACAGTATTCTGTAGAGCTTAAATGTACTGGTTTTGTTCTAATATTCAAGCACATATATACTTAAGACTACCACATATCAGCTTGAGGGAGCAAATAAGACTTGATTTTGATGAGCTGAAAGCAATGAGATCTGTGCAATGCCAAGTAGACAGTGTAAAATATCAATTTTCTTTGACAAAATGGCCATAATAATAGGCTACGTTTAGGAATTGTGGATGGGGTGGTCATACACAAATCGTTCCCAAATCCTGTTGTCCTCTTGAAGTCTCTGCTGTTCCTTCTGCCTTGCTATCTAGAGCATGTACAACAATCCTCTTTTAATGCCAACAACAGGAACTATGACTTAACAAGATACAAGGTACAATCAGTGTGAAATGAAAGGAAGGTATGAATTCGAGCTCCTTTGCTGAAGATGAAAGTTCTGGGGTTTGTTGGGGGAGGAAAGGCAGGGTCGGTTGGAAAAGGTTCTTAAAGCAGTTGCTTGTGTTAACtgtgaatgacaaaaataaaatcgtCTTCAATGTTTTGCACTACA

Function

GO: NA

KEGG:

id description
K07206 TSC1; tuberous sclerosis 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212176 lncRNA upstream 6989 3608919 ~ 3610050 (+) True G143638
TU212097 lncRNA upstream 124452 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 124474 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 124474 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 280350 3336261 ~ 3336689 (+) True LOC122326852
TU212203 lncRNA downstream 117424 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 129157 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 169283 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 285558 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA downstream 286905 3921080 ~ 3921279 (+) False LOC122326258
XM_043221608.1 mRNA upstream 14559 3544243 ~ 3602480 (+) True bcr
XM_043221609.1 mRNA upstream 14559 3544243 ~ 3602480 (+) False bcr
XM_043221006.1 mRNA upstream 74301 3514033 ~ 3542738 (+) True atp2a2b
XM_043221151.1 mRNA upstream 111452 3503222 ~ 3505587 (+) True arpc3
XM_043221148.1 mRNA upstream 114297 3499645 ~ 3502742 (+) True gpn3
XM_043220941.1 mRNA downstream 103206 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA downstream 103206 3737381 ~ 3748407 (+) False stom
XM_043220943.1 mRNA downstream 103208 3737383 ~ 3748407 (+) False stom
XM_043221653.1 mRNA downstream 152584 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA downstream 152586 3786761 ~ 3918707 (+) False rxraa
unassigned_transcript_2519 other upstream 1808 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 297160 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 299144 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 670116 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1379844 2233659 ~ 2237195 (+) True G143321
TU212191 other downstream 67254 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 67254 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 67254 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 472626 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 498261 4132436 ~ 4386212 (+) True G143726

Expression Profile