RNA id: XM_043221499.1


Basic Information

Item Value
RNA id XM_043221499.1
length 3083
RNA type mRNA
GC content 0.45
exon number 19
gene id cul5b
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6277379 ~ 6285811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACACGTTAAATACTTCTAGCGACGATTAATGAGAACCGAGATTAGGAGACGTGTCTGTATCTGCAGATAAGATGCAGCTGGTCGGCCTTCGGGTTGTTATGGGAAAGATCATGTGTCCTTGGACATGGAACTGGCTCCAGATTATCACTATTCACACAGTAGTTGTGATTCatgttaatttactttttaatataatctGGGTTAGAACTAAACTCTCAAGGACAAGGCATTTCATCACACTGGCAGTACCTAATGGTgtgatgataaaaacaaacGTTTCATCCTAGATAAAATAAGATAGAATAAGCAAGATGCATTCATTgactgttcctttaatataaaagtcgtatgttctttctttctttaaaatataaaaatatgcacgaATAAACAGCAGTATTAGTGCTGCTGATGCAGTCTGTCCCGGTGctccctagcaaccaaccaCCTCAAACATCGCGAGACTGCACGGGGACTAAGTTGAAGAAACATGGCGACGTCTAATTTATTGAAGAATAAAGGCTCCCTGCAGTTTGAAGACAAATGGGATTTGATGCGGCCCATTGTTTTGAAGTTACTCCGTCAGGAGTCAGTAACTAAGCAGCAGTGGTTTGATTTGTTCTCAGACGTTCAtgcagtgtgtttatgggaTGACAAAGGCCCAGCAAAGATTCATCAGGCACTGAAAGAAGACATCCTAGATTTCATCAAGCAAGCACAGGCACGAGTACTCAGTCATCAGGATGACACTGCTTTGCTTAAAGCTTACATTGTGGAGTGGAGGAAGTTCTTCACACAGTGTGATATTCTACCTAAGCCCTTCTGCAAGTTGGAAATCACCCTGCTGGGCAACCAGGGGAGCAATAAGAAGTCCAATGTTGAAGACAGTATTCTTATGCTGGACACGTGGAATGAGTCTATATTCTGTAATATAAAGAACCGGCTCCAGGACAGTGCCATGAAACTGGTCCATGCTGAGAGATTAGGAGAAGCATTCGACTCTCAGCTTGTCATTGGAGTGCGGGAGTCATACGTGAACTTGTGTTCCAACGCCGACGACAAGCTCCAGATCTATAGAGAGAATTTTGAGAAGGCATATCTGGATTCCACTGAGAGGTTCTACAAGACACAAGCACCTTCCTATCTGCAACAGAACGGCGTTCAGAACTATATGAAATATGCAGATGGCAAGCTAAGAGAAGAGGAGAAGCGTGCACTTCGATATCTGGAAACCAGACGTGAATGTAACTCCGTCCAGGCACTAATGGAGTGTTGCGTGAATGCGCTGGTGACGTCGTTCAAAGAAACAATCCTGGCCGAGTGTCCGGGAATGATCAAGCGGAATGAGACAGAGAGTGAGTACGGCAGGAGCTCTGGCACCAAAGGCTCAGCGAGTTCAGAGCTGCACCTCATGTTCTCGCTGATGGACAAAGTGCCCAATGGTATTGAGCCTATGCTGAAGGACCTGGAGGATCATATCATGAGCGCAGGTCTGGCTGATATGGTGGCCTCAGCGGAAACCATTACCACAgactcagaaaaatatgttgagcAGCTCCTAACATTGTTTAACCGCTTTAGTAAATTAGTTAAGGAAGCATTCCAAGATGATCCACGTTTCCTAACAGCCAGGGATAAAGCATACAAAGCAGTAGTAAATGACGCCACAATATTTAAACTAGAGCTCCCTCTGAAACAGAAAGGTGTGGGTTTGAAAACACAACCAGAGTCCAAATGTCCAGAGCTTCTGGCCAACTACTGCGATATGCTCCTTAGAAAGACCCCACTGAGCAAAAAACTCACCTCAGAGGAAATAGAGGCCAAGCTGAAGGAAGTGCTCTTGGTTCTAAAGTATGTTCAGAACAAAGATGTCTTCATGAGGTACCATAAAGCGCACTTGACCCGCAGGCTAATTCTTGACATTTCTGCAGACAGTGAGATTGAAGAGAACATGGTGGAGTGGCTCAGGGAGGTCGGTATGCCAGCAGATTACGTGAACAAGCTCGCCAGGATGTTCCAGGACATCAAAGTATCTGAAGACTTAAATCAGTCCTTTAaagaaatgcacaaacacaacaaacttGCGTTACCAGCCGACTCGGTCAATATAAAGATCTTGAATGCAGGAGCATGGTCTCGGAGTTCAGAGAAAGTGTTTGTATCCCTGCCCACGGAACTAGAGGATCTCATTCCTGAAGTTGAGgagttttacaagaaaaatcaCAGTGGCAGAAAATTACACTGGCACCATTTGATGTCCAATGGCATTATCACATTCAAGAATGAAGTTGGCCAGTATGATTTAGAAGTCACGACATTCCAGTTAGCTGTGCTGTTTGCGTGGAACCAAAGGCCCAGAGAGAGGATCAGCTTTGAGAATCTGAAACTGGCCACGGAGCTTCCAGACGCCGAGCTGCGCCGGACTCTCTGGtcTCTTGTAGCTTTCCCCAAACTAAAGCGTCAAGTGCTGTCGTATGAACCTGTGGTGGGCTCTCCTAAAGACTTTGCAGAAGGCACCGTATTTTACATCAATCAAGAGTTTTCTTTAATAAAAAACTCAAAGGTCCAAAAAAGAGGGAAGATCAATTTGATTGGTCGATTACAGCTCACCACAGAGAGAATGCGTGAAGAAGAAAATGAGGGCATAGTGCAACTTAGGATATTACGCACACAGGAAGCTATCATTCAGATCatgaagatgaggaagaggatCAGCAACGCCCAGCTTCAGACAGAGCTGGTGGAGATCCTGAAGAACATGTTCCTGCCCCAGAAAAAGATGATCAAAGAGCAGATCGAGTGGCTGATAGAACACAAATACATCAAACGGGACGAGACGGACATTAACACGTTCATCTACATGGCGTAGCCGACCACGCCCAGTGTACTCTGGGACGGTTTTTTTTTAGACACTAGACCTCCTTTGGAGGATTCCATATCTGATTTCAACCCATTGCCCAGCCTGGCCTGCTGGGTGATTGACTAGGTTCAAGACGCATCACGCTGAGAAACTGCTGACAAATCCCTGCCTTACTTCACAGATctatcaaatgaataaaaacaaactttggAAGAAATAGA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213061 lncRNA upstream 214699 6062424 ~ 6062680 (+) True G144212
TU212969 lncRNA upstream 346494 5929769 ~ 5930885 (+) True G144157
TU212961 lncRNA upstream 428809 5847941 ~ 5848570 (+) False G144152
XR_006247429.1 lncRNA upstream 482775 5792864 ~ 5794604 (+) True LOC122326140
TU212949 lncRNA upstream 535474 5738465 ~ 5741905 (+) False LOC122326918
TU213215 lncRNA downstream 176839 6462650 ~ 6462933 (+) True G144308
TU213228 lncRNA downstream 211890 6497701 ~ 6537141 (+) True G144317
TU213244 lncRNA downstream 246229 6532040 ~ 6533579 (+) True G144329
TU213267 lncRNA downstream 297119 6582930 ~ 6584814 (+) False cfap300
TU213276 lncRNA downstream 319670 6605481 ~ 6606030 (+) True G144347
XM_043221418.1 mRNA upstream 19127 6097498 ~ 6258252 (+) True gria4b
XM_043221417.1 mRNA upstream 19127 6097502 ~ 6258252 (+) False gria4b
XM_043221419.1 mRNA upstream 20805 6097488 ~ 6256574 (+) False gria4b
XM_043221421.1 mRNA upstream 20810 6097487 ~ 6256569 (+) False gria4b
XM_043221422.1 mRNA upstream 38347 6097485 ~ 6239032 (+) False gria4b
XM_043221501.1 mRNA downstream 333 6286144 ~ 6320227 (+) True capn5b
XM_043222208.1 mRNA downstream 43482 6329293 ~ 6353765 (+) True myo7ab
XM_043221750.1 mRNA downstream 77443 6363254 ~ 6370541 (+) True nadk2
XM_043221751.1 mRNA downstream 77444 6363255 ~ 6370541 (+) False nadk2
XM_043221482.1 mRNA downstream 100431 6386242 ~ 6395614 (+) False lmbrd2b
XR_006247541.1 other upstream 351852 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 353018 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 353884 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 428326 5847941 ~ 5849053 (+) True G144152
TU212951 other upstream 477851 5797698 ~ 5799528 (+) False LOC122326980
TU213247 other downstream 248289 6534100 ~ 6535794 (+) True G144330
TU213575 other downstream 1621653 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 1622244 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 1622244 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 1622244 7908055 ~ 7909027 (+) False anapc13

Expression Profile