RNA id: XM_043221519.1


Basic Information

Item Value
RNA id XM_043221519.1
length 3593
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC122326553
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4338972 ~ 4359303 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTGCTGATGGTTATAGCCTTGTGCCTATCCTGTGCTAAAGGAATGAAGGTTGTGGAGTTGTCTGATGACCCAAGATCCCTGTCCCCTCTCGCTGCTCCTCCAAGTGTGAACTATCAAATCATCAATGCAGacttcctcctcctcagagACACCAGTCAGGACGTAATGGACAACTCCAGCCTGCGGGCACAAAGGCAACCTTTCATCCTCACTGGACTCACTGGCCAGCCAGCCATCAATGTCAGCTATGGTCCCATGTCTTTGGAGCAGTCTATACCACTGCATATGATCCACACCGGCCCCAGGATCCCGTTTATATTGGCCCGTCAAGTACGTTCTTCTACGCCAGCCTTGTATGTGTTGTTTTACGCAACCGGTAATAGAGACGATATGAGCGAGGGCCCGATGCAAAACATGCCAGGACAGAATGAAGGAGGGTACATTTGTCTTACAGCATATGCCTTCTGGGAATCCAGAGAGGTCAAGGACAGTTGCTCCATCTCTGCGGATGGTGGATTCTGCTTGGTGCACCTGAAACCTGAGCCAGCCTGGTTCAACCGAGGTGGCAGGTCAAGCTGGGAGCAGAGAGGCGATCAAAGAGGAAATGTTGCTGAACTTTACTACCAGATCAGACCCAGTCCCAGCGGTCAGTGTGTCCCGCAAGAGAGCAAGATAAGAAGGGGTCCACAGCATAGTGACCTGGGACGACAGATCTATGGAACCTCCATGAAGAAGATTGGGACCGTAAATCTCCTGCGATCGCCTCCTGGAAACCCCACGTTTATGCGTTTACGCCTCGGAGGAGCCGTCATCATCCAGACGTCCTCGAAACCACTAAAGACCACAGACACTGCAACTTTCTATGTGTTCCTATCAAGCACATCACCAGTTGAACATTTCATACTCAGAGCCACATCAAGAAAAGGCATGTCATTCAGCACAGCCAGACCCAGTGATGCAAGCCTGTGGGACATCACTCTGGAACCTGGGAGAGGAAGTGACGCCCAAACCATCTCTGTGACCTGCCAGAAGAAAAGCACGTTCACTAGCAAAAGAGGTCTGCTGGAGGTCTTGCAGCTGGACTTTGAAACGGAGGAGCAGAGTGATCAGTTAGAGAGCCAGATGATCACGTGGCGACTAGAGCTGCCTGGAAACATGATCCGGGATGAAGGAACCATGAGGATTTACACCATTCAGAGAGACTATGTGGGAATAGCACCACTGATCAcggatacgGAGCTCCTCAACACGGCTGTGCTGACTGGTAAGAGGGTTTCTGTGCCTGTGAAAGTTTTGGGAGTTGAGGCTGATGGCTCCATCACAGACATCACTAACTCGTCTCGCTGCAGGTCTTCAGACCAGGATGTCCTGAAGGTGTCTGAGAGGTGTGATTCTGTGTATGTTAACGGCAAGGAGACGCGTGGAAGGGTGAGGATGATGGTGAACTTCACCTACAGCTACCTGAGCACACAGCTGGAGGTGAGCGTGTGGATGCCTCGAGTCCCCTTGTATATGGAGATATCTGATTCAGAGCTCAGTCAGATCAAAGCCTGGAGAGTTCCTGTCACAGGAAACAAAAAAGTGAGCTGGGAcacagaggaagaggatgagagGAAGGGCCGAGGCTGCATGCTGCAGTATCAGCACAGTTTGATTCGAGTGCTTACGGTCTTCACGGCAGAATCGCCAGATCCAAGCAGCCCGTCTCCTGCATACTTCCTTGGCTCTGATTGGCAGGTAGATGTGACACGGCTGGTTCGCTACTTTCTGAGAGTCGGGGATACAAGCGTTGCTCGCCTGCAGGCAGGAACCGTGCTGACAGGCAAGGCTGTGGGAGTCACCACCGTGCAGGTGATGTCTCCGTTGTCAAACTCGGTTCTGGCTGAGAGGATGATCCGAGTTCTGGATGATAAAGTCAGTATTACAGAGCTGGGTGTGCAGCTGGTCTCTGGCCTTTCCCTGAACCTGCAGCTCAGCCCAGGAAGCAACAGGGCCATCATTGCCAAGACAACCACACAGGAGATCATACACTACCCCAAGCAGGAGGCGGTGGTTGGCTGCTGGCTGAAGTTCAGCGATGGCTCCCAGACTCCTCTTGATGTGTACGATCCCAGTGGTTATTCCGTCACCATTTCTTCACTGGACCCAAAGGTAGCAACTGTGCGAAAGATCCCGGGGTCCGTCTTTGTTGTGGTCGCTGAAGCCGAGGGACAGGGCTTACTACTCAGAGCGGAGCTAGCTATCTGCGAGGCTTGTCAAAAATCCAAACGCAAGAGCAAACTGGCTGTGGGTGGAGGCATGGTAAAGGTAAAATTCCCGCCGGATGAACAGTTTGCAGGGACTGGCAAAAAAGAAAGTGATGGTGAGGGTAGAGACGATGTGTCTAAACTGATTCTTACATCCCCTCTAAACACACTTCAACACACTGTTATCCAAGAGAGCACcacaaaagcattcaaaactgcAACCAATTCCAACCTTCAAGAAGCAATAGGAGGTGGCGTATCTACAATTAATTCCCTAAACACTATGGATAAAACTCTCATTACCAAGCCCATTGCAGACATAGCGCTTGTTACTGTAGGCCCTAGGAGTCCAATAAAGAACGGATATGGAAACCTGCTTGAGAAGTCTAACTTCCCTTTTCCACCACAAGAACCCAAGAGAGAACCACCATTAGTGGAGAGTGACTTAATACAGATGTTTAGTGTGTTCACAGACATAGAGGTCTGCATCTATGCATTGGTAGGACTCTCTTGCTTGGTCATTATCGCCATCTTACTTCACTGTGCCACCAACAGCGCAAGATCACGCAGCAAGAAGTCTCCGGTTCAGTGCCAGGGTCAATCTGAGCACAAGCATCACTGGGTACGTCTAGGCACAGCTGCAGAGCAAAACAGAGCTGCGCCGATTGCGACTACCTCCAAGCAGGAGATGCAGGCAGCTGTGCAAAGACCGGTTCAGATGCAAAACAGCAGAGGCCCGGAGACAATCCAGCCGAGGGAGATCCCAGCCATTGCAGGTGAGGAGAGAACTGCCACTCTGGGACGAAGAACCAACACGCTTCCTCCGAGGCGGGATCCCATGGCTCCACTGCCTCCAATGGCAGTCAGATCTGCCACCCTCCTGGCAAGGCCCGTTCGCAGCGATCCTCTACATTCTCCCACAAGCAAAAGGAATCAGGTGCAATTTACAACCTTTACTACTCTGGACATCAAACACCTGGCTGCTCTCAAGAAGAGTGGCCAGAACTTCAGCTGGGCCAGTCAACCAGTTGGAGGTTGTCAAGCTGCCAGTATCAGCCAGGGTGGGTTAAATGGTAAAGCTGAAAGAGTCAatcatgtacatttttgtaaccCTGTGGAAGTATTTGCTCCGACACCGGAATCCAAAGAATCCAAAGGATTTCTTCCAGAAGGTCCATGGCCTATGGCTACACCGGTGTCAAAAGTGTGATGGTTTCTGTTTAAATTGGCCACagatctatttttatataaattgttgCATTGAACTGAATTTGACAGTTTATATAGGAATGTTTTTATGGacaatttaacacaaaaatttctttgtttttcatttatgtgtAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212327 lncRNA upstream 230294 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 252446 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 417253 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 417693 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 535203 3803458 ~ 3803769 (+) True G143664
TU212347 lncRNA downstream 152623 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 192118 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 204031 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 229423 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 391914 4751217 ~ 4751510 (+) True G143826
XM_043221521.1 mRNA upstream 7618 4287203 ~ 4331354 (+) True LOC122326555
XM_043221520.1 mRNA upstream 52547 4283196 ~ 4286425 (+) True LOC122326554
XM_043221737.1 mRNA upstream 110480 4207661 ~ 4228492 (+) True rimbp2a
XM_043221736.1 mRNA upstream 132291 4106787 ~ 4206681 (+) True LOC122326660
XM_043221735.1 mRNA upstream 232820 4102906 ~ 4106152 (+) True stx2a
XM_043221210.1 mRNA downstream 151067 4510370 ~ 4520829 (+) True smpd4
XM_043221211.1 mRNA downstream 161662 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221386.1 mRNA downstream 178959 4538262 ~ 4544632 (+) True crkl
XM_043222093.1 mRNA downstream 195055 4554358 ~ 4557626 (+) True nefla
XM_043221560.1 mRNA downstream 221331 4580634 ~ 4583302 (+) True rpl17
TU212324 other upstream 125200 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 225239 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 634575 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 221748 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 222615 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 223796 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 345898 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 371300 4730603 ~ 4730881 (+) False slc45a2

Expression Profile