RNA id: XM_043221520.1


Basic Information

Item Value
RNA id XM_043221520.1
length 1497
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122326554
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4283196 ~ 4286425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCACCTCAGTTTAGCAACGAATCATTCTGTCATGCTGTGCGTAGTGTAGCGGGTGAGAAATTAATTTGAAGTCGAAATGAAGGACCGTCTGGGCGATTTAACAGCCCTCTGCCATGACATTATCATCGCTCCAGTAGAGTCCAACGCTTTCCTAGAGGAATTCCTCCCCAAGGTTAATGAGGTTCAGCGACTTATACAGAGAATTTCCCTCTATGTGGAAGAAGTAAAGCTGAGACATAGTACCATTTTGACAGAAATCAACCCACCAAATTATGTGAGAGAGGAACTTGAGCAGTTTAGCAGTGACATCAAGCACACAGCCGATGTAatcaaagctaaaataaaagATTTAGAAGGAAAATTCTCAGAGTATGAGAATGCTAACAGCAGCTCCGTGTACTTTCGCATCCAGACTACTCAGCACACAGTGCTTTCACTAAGGTTTGCAGAAATAATGAATATGTACAACGAAGAACTGCTATCTTTCCGGACAAAGAGTAAAGATCACATACAAAGACAGCTGGAAATCAgtgGCCAGGTTGTCACCGAAGAGGAGACTGAGGTTTTGCTGCAAAGTAACAACCCTGCTGTGTTTACCTCAAATATCAACTCCTGCATCACGAGGCAAGCACTGAATGAGATTGAGTTACGGCATATGGATATTCTCTCTCTGGAGGCCAGCATTCGAGAGCTGCATAGCATGTTTATGGATATAGCCATGTTAGTCAATAGCCAGAGTGAAATGGCAAACAACATAGCAAAGACCGTGATGCGAGCTGGAAACTATGTAGATCAAGGGAAAGAGAACATTGAAAAAGCTGTTGATTACAAGAAGTCCTGGAGGATAAGACTGCCTATATTCAAGAGCAAAGCAAAACCAGCTACTAGCAAGAGCTCTTGAATGAATCTTGAACTTTGGAATGTAAGCTGCTTGCGTTTGAGTTgaaaaagaaggatgaaagTGAAGGATTCATATTCCTTGCCTTTTCTTTAAAATCCCATTGTGTCACAGTATTTATTCAACACCCTGTATATCTTTTTGCTGGTCAGATCATTTGTAGCTATCTTTGGGATTTGCCCATTTGCAAACAAACggcttttatttgtttctgcTTAGATGGTTAATGATTAAGCTTGCTCTCAGATACATAGACAACACTAGCAGAATTTTTCTGACGCAATATGACTACGATCACGTGAGTGTCAACAGGTGTGTTTAGATGGACTAATGTTGCTCATAGGGAATATTCACGCTATATACATTCAATACATgcttaatttattcctgttcaGGTCTACACCTCCTCTTTCCCCTCTTTCCATCAAAGACTGATTAAGGTGTTCACATACACGCTTTTCAGTCAAACTGTACCTTCTTTTTTCAATTCAATGGCAGTTGGGAAACAgacattttgtgcatttcaaCTAATGCATCTGCATTCAGAATAAGACTTTCTGACctggtttaaaaatgaaataaataagtctAGTTACA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212327 lncRNA upstream 174518 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 196670 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 361477 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 361917 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 479427 3803458 ~ 3803769 (+) True G143664
TU212347 lncRNA downstream 225501 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 264996 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 276909 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 302301 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 464792 4751217 ~ 4751510 (+) True G143826
XM_043221737.1 mRNA upstream 54704 4207661 ~ 4228492 (+) True rimbp2a
XM_043221736.1 mRNA upstream 76515 4106787 ~ 4206681 (+) True LOC122326660
XM_043221735.1 mRNA upstream 177044 4102906 ~ 4106152 (+) True stx2a
XM_043221690.1 mRNA upstream 208777 3947067 ~ 4074419 (+) False vav2
XM_043221521.1 mRNA downstream 778 4287203 ~ 4331354 (+) True LOC122326555
XM_043221519.1 mRNA downstream 52547 4338972 ~ 4359303 (+) True LOC122326553
XM_043221210.1 mRNA downstream 223945 4510370 ~ 4520829 (+) True smpd4
XM_043221211.1 mRNA downstream 234540 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221386.1 mRNA downstream 251837 4538262 ~ 4544632 (+) True crkl
TU212324 other upstream 69424 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 169463 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 578799 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 578799 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 578799 3701429 ~ 3704397 (+) True G143650
XR_006247544.1 other downstream 294626 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 295493 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 296674 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 418776 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 444178 4730603 ~ 4730881 (+) False slc45a2

Expression Profile