RNA id: XM_043221521.1


Basic Information

Item Value
RNA id XM_043221521.1
length 7261
RNA type mRNA
GC content 0.47
exon number 28
gene id LOC122326555
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4287203 ~ 4331354 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttttgctctctttctcacatTCGCAGCTTGTTATACCTTGGAGAAAATGTCATGGTCTTACTTGCACTCAATCTTTCTGTTAACTTGCCAGAATGTAACAGATGTAACAGAACATACAGTTTTCCTTAACATTAAGTTGGGCTGCTGTCAACAGGGCCGCAGTACGAGACGAAAAGAAGACAAGAAGACATCAAATAAAAAGGAGATGCGAGGTCAAAGAATTGACGTAGAGCAGCTTCTCAGGCAGTCACAGACTGAACTGCTGTGGATCCAGCGACAGCTGTCAATCATAGCAGCAGGAGATGCCAATCGTGCACGGGCCCAAAAGAAGCTGAAGCAGGAGGCCCAGCCGTTGCACCTGGCCTCTCACGCAGCCCACCATGTGAACCGCTGCCACCTCTTAGAGGAAAAGAACAGAGCTCTTAAACTTGAGCTAGCCACTCTCAGACAGCATAAACAGCAGCACAGATCTCTGGAGTCAGAGGTCAACGAGCGGAGGAAGAGGTGTCAGATCCTTGAGAGAGAAGTGAAGAATAAGGCATTAGAATGTAAGACTTTGAAGAATGAGCTTCAGGATGCTTTGCTGGAGAGAAAACGGCTCAATCGTGAGCTGCTTAGTCACATCCTGAAGGCCACACAGTACGAGAAGGTAAAGTCAGACTATGATCAGCTCAGAAAGGCTTTTGGTTGTGTGAGTCAAGAGAGAGACTCTGCCAGGCAGGAGAAGGCTCAGCTCCAAGACAAACTGGAGAACCTTGAGCAGGTCCTGAAGCATATGCGAGAGGCTGCAGATCGGCGGCAGCAACTGGAGGCAGAGCATGAGCAGGCCTTGGCTTTCCTCAACTCCAGACAGCAGGAGATCAACCTTCTGCAGAAGGTTCAGGCTGAAGCTGAAAAAGAGCACGAAGAAGTGGTGCATTTGCTAGAGAGCCATATGGACAAAATGCAGGTCAAGGTTCATGACTTAGAGCAGAAATGCCGGACACAGAGTGAGCAGTGCAATATTTTGTCGAAAGAGCTGGAGAAATATCACCTGGGGTCAGACGTGGAGGATACACTCAACACTGACTCACAGGAGAAAAACTTGTGCAACAGTTACAACAGCCTGCAGCGCCAGGTCGAAAAAAGTGATGAGAGATCTGACGGATCTCCACTGGTCTCAGAACTGCCCATAGTACAGCAACACAAGAGAGACAAGCCGGAGCAGCTGTCGGTCAAACCCACCGTTCAAACCCAGAGTCGCTCCAGCAGCCCCATGCAAGCATCCCTCTCAGAGATGGATGATGAAGTGAGCCCAGCTCCGAGGACCAAGACAAGATACACAGGCCAGGTCCGTCTCTGCACTGCCCGATACAGTTATAATCCCTATGATGGACCAAACGAGCATCCAGAAGCAGAGCTCCCTCTTGTGGCAGGGAAGTATTTGTACGTATATGGAAACATGGACGATGATGGATTTTATGAAGGAGAGCTATTGGATGGCCAGCGTGGCCTGGTTCCCTCTAATTTTGTGGAGTTTGTCCAGGACAAGGAAAAGCCATCTATCGAGGGTGGAGAGGAGCAGGGCAGGCTGGAGCAGAGCTGTCTGAGCCTGGTGACCATAGATGGAGGCGCTCCTCTCGACAGCCTTAGCACTGATGCCCTCGGTCACTGCAGCAATGGGACAGGCGCTCTGGATGGAGAGGAACTGAGTGATGACATCGTGCCTTACCCCAGGAAGATCAACCTGATCAAACAGCTGGCGAGAAGTGTGATAGTGGCCTGGGAGGCGCCTCTAGTGCCCCTCGGCTGGGGCAACATCAACGGCTACAATATCTTAGTGGATGGGGAAGTACGCTCCTCTGTGCCGTTTGGAGGGAGGACCAAACTGCTTCTCGAAAAGCTGGACCTGGCTGCCTGCACATACCGCGTGTCAGTACAGAGCGTGACGGACAGGGGGCTCTCTGATGAGTTGCGCTGCACCTTGCTGGTGGGCCGCAATGTTGTGGTGGCGCCCACCGGTTTGCGCATGGATGATATTTTACGTGACGCTGCTGAGCTTTCGTGGCTGCCCAGTAATAGTAACTACGCCCATGTTGTGTATTTAGATGGCGTGGAGCACGCTGTGGTGAAGCCATGCTCTTACAAACTGCGTTTTGTAAACCTGAAGGCCGCCACAGTGTATAAAGTAAAAGTGTTGGCCAAACCTCACCAGGTACCCTGGCACATGCCTCtggaacagagagagaaaagagaggctGGAGTGGAGTTCTGTACCCAAGCTGCAGGGACCCCTCTGCCTCCTCAAGAAGTCCAGGTCCAGTGTGGACAAGCCCCAGGAGTCCTCCAAGTTCTGAAGCCCCCTCCAATGACACCCATGGGAACCTCCAATGGTGCAAATGTCATTGGCTACGCAGTCTGCACTAAGGGTCAGAGGATTGCTGAGGTGTTGTATCCACTGGCAGATTATGCCGCAGTAGAACTGAACCGTCTCCAGTGCTTGGAGGCCCATGAGGTTATTGTCAGGACTTTATCAGCACAAGGGGAATCTCAAGACTCCCATGCCGccgtcattccaaaccacctgCTGGTGCCTCTTCCTAAAACCCTTCCTCCCTCTCACCACATGCAATCATCTCTCCCACCCCAACAGTCCCAACCAATGCCTCCTCATCCCCAAATTCGGACCCTTCCTCCTCACCCTGGACCACAACAACCCACCCATCTCCAACCCCTTCCCGTTCGCCCCAACCAGCCCCCATCTCATCTCCATCCCCATCGTATGCCCCATCCCACACAACCCTCTCCACCCCACCTCCAGCCTTTACCACCACACCCCATCCCTCAACCCCAGCCCACCATCCCAATGCCCCAGCCTCAGACATCCATGCCCATGCCCCAACCCCAGCCCCAGCCACCCATGCCTATGCCTCAGCCCCAACAGCCCATGGCCATGCCTCAACCCCAACCGGCCATCCCCATGCTTCAACCCCAACCAACAATCCCAATGCCCCAGCCTCACATTCCCCAACTACCCCTTCCCCAGTCCCAAAGACCACTAAGTGCCAGAGAACTGGAAACCAAAGAGCCAGGGCCAGGAATGCATCATCATGGAGGAGGCCCACCTCAGCCATGGGAGCCTGGCTGCTCCCCATCAGGCATGCCCACAGGCCTGCCACATGGACACACCCTGGATGCTCCGGCCTGCCCAAACCGCCGTTCCCCATCACCTCAAAGGATCCTTCCCCAACCCAGGGGTACACTCATTCCTGACACTGTGGACAAGGCTATTGCCCGAGAGGCAGCCCAAAGAGTGGCTGCAGAAAGTGGACGGatgGAGAGGAGAAGCCAGGGTTTTCACTCTCAAAATTcagatgaggaagaggatgaggaaaGCTATCAGGCCCGCAGAAGAGGAGCATCTGTGGATGACTTCCTCAGGGGCTCAGAGCTGGGCAGGCAGTCTCATTACAGTCACAGCGAAGAGTATCATACAGAGAGCAGTCGAGGCTCGGACCTCTCGGATATCATGGAAGAAGACGAGGAGGAGTTGTATTCTGAAATGCAGCACGAAGAAGGCAGGCGACGAAACTCCCACAATGCACCCAAGACCGGAGGCAGCACTCCATCTTCGAGTCAGCTGGATCGGGAATCATACCGGAAGCCATCTCACAGAGGTCCTCAACCTCAGCGCCGACCCCTCACGGTCCCATCCATTGAGATAACCACTGAGAGTAACAGTGAAGGGAACCTCTCTCCGGTCAAGGAGGATGTTTACTATGGCAGTGTAGCGCGACACAGGACATGGTCCTCCCGAAGGCACGGGGGACGCAGGCCTCCTTATGATGGATACCGGGAACGAAGCCGCCGCTCTCCCCCTTATTATGATGAATCTGAGCAAGAGGACCCGTTTCGAGTCTTTGTGGCACTCTTTGACTATGACCCTCTCTCCATGTCCCCTAACCCTGATGCAGCTGATGAGGAGCTCCCTTTTAAAGAGGGACAGATAATCAAGgTGTATGGGGATAAGGATAATGATGGCTTTTATCGTGGAGAGATCCGTGGCAGGTCTGGACTTATTCCCTGTAACATGGTGTCGGAAATCCGTGCTGAGGATGATGAAACTATGGAGCAGCTCATGAAACAGGGATTCCTCCCTCTCAACACTCCTGTAGACAGAATAGAACAAAATAGGAGAGGTCGCCACCCAGTGGCCACAAGACGAATGGTTGCCCTGTACGACTACGACCCCAGAGAGAGCTCCCCAAACGTGGACGTTGAGGCTGAACTGACTTTCTGTGCTGGCGATATCATTGCTGTTTTTGGGGATATAGATGAAGACGGCTTCTATTACGGTGAGCTTAATGGACATCGGGGCTTGGTTCCATCCAATTTTCTCGAAGAAGTGCCTGATGACGTGGAGGTCTATCTGACGGACACTCCCTCTCACCACGGTCAGGACGAGTCCAATCCGGTACCGGCACCGCGCCCAGAGACCAAACGGGTTCCGGTGGAAAGTACAGTGCCGGCTCCGGCCCCTGGAAGACCCGCCTCTCCCACTGTGCGTCCTTTGCTTCCCGTTGGCCCAGTCAGGCCGCTGAGCCCTGCCAGGGGTCCACGAGACCTGgcatctaaaaagaaaaaaggactGCTCTCTAAGGGGAAGAAACTGCTCAAAAAGTTCTCAAAGTAAAAGTATGAGATTGATTTCAAATTCATATGGCTACAACAGCATACAGATTTCTCTCTCAAAAGGGAAACAACCAATCCCCAGTGTTTCATAAAAGTctatggtgtattttttttctcacacacacacacacacacacacacacagacacacactcacacacaaatctAAACAGCTTTCACATTAACATGCCACGtacatattctgaaaaagatCTAATATTCAGATGAAAAGGAATGACATATATAAAGATGTCACTCATACGTCAGTGAGCTTGCTAATTGGCTGTCAGAATGAAAGCATCTATTCATACTGTGATGTAGAGGACAAAGagatattgttaatatttaaggAATACCTTCAATtataattttcacatttcaaatcaaagtgctggattttgaatgaaatttttaatcTACTAGATTTTAAAGTTTGGTAGAGCCATTGGTgataaaaacagttcaaaaagcactttaaatatgGTCTGACATTGTCAGTCAAATAGcagtaaatgacaaaaacctCCAGACCATATTAAGTGCGTTAGTCTCAAACAAAAAAGACCACGATCAATCCAGTGAAAGACGAGCAAAGGTACAAAATGGCATAACTGACCAGAGCAGTCTATAAGCAAATCCTTTTAAACATTGCTGTGGCCTTCATCTAAACTCAGTAAGTACAGTATATTACCTACATCTGATGTCTCCATACATCAGTCTTTGCCAAGTATTCTCCCTTTTGCTCCCTTTCCTGCGTTTATCATGAGAATGACTCTGAAGTTATAAAATACAACGGAAAGTTTCTGTGTTTGCCTTTTAATGCACAATTCGGTGTGTTTTGGTGAATGGctcgtgtgtgtgcgtgtttgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtctccccTCTGCATCCATGTTCGTGCAACCccttaaaactgaaaaaggaCAAATGTTGTTATAAACTTTTGTGATAATGTGACGTGCTGCTAATTACAAGTTGTTTCCTGTTCCTTTCTAAAGTCAATAAGGGTGGTGTCATCTTcataagaagaaatatttaagcaaagATGGTGTCTTGGTGTCTCCTTGAATTTCACTTTCTAAGGGCCGGTTTAAACAGAACGCATTTTTGCCATGGCTGATTCGAGTTTTTCGACGTAAACAAGCGAAAGACTGACATTTGACTCTTTCTCAAcgttcttgtttgtttttagcaaaGGTAGTTTGACTACATGCACAGAAACACTGTGTTCTTTGCCATTCCATTTTAAACACAAGAATGCGTTCTGTATAAACagattttcatccaaaaatgaaatttctctCATTATTTAGGCAACTCTTAAACCCTAACGTCATTCCAAAACTGTATGCCtttctttattctgtggaacataaaaggagatattttgagaaatttcCCTCTCGCTCTATCTTTACTCTATCCGTATATACAATGGAAAACTGTTCAGAtttcaacattcttcaaaaggagcctttcttttatgtttcacaaaagagagaagtcatacaggtttgatcgacgctttcatttttgggtgaacagcCCTTTTAACAATGGTTTACACGAATGGGTCATGGCTGGTTATGAGAACATCATCTATAGGCCTAAATAACATATCCTTGCTGCTGTTATCATTGGCTGTTTTTCCTGAGGTCTTTGCTTGCTATTGTAGAATCAAACATGAGGACTTTGCAATTCATATTCTCAGCTACCAATACAGGTTAAGTAATACCCTCAGGCAAAACTAGCTATGATGGCTCAGTTGTTTCAAGCTATAATCTAGTAGTTTACATTAAGGGCAAAATCTCTTGCATCAACACAAAACATCTTGCCCCAGCAACTGGAAATGCGAGGTTGAGCCAACGTTTGGTGGCATCTCACAATAATGTGGCCAGTTGGATTTAGATTGCACTCTTGAATGGTTTGATCCAGGgtaaatactgtgtgtgtttttttttttatctttaaaaaaagattatattaaaagtatactatatttaagcattttaattaatacattcatTTGGGGTGAATGGAGTTTATTTGTTGTAGATGAAAAACATGGAGGGttctaatcaaaaaaaaaaaaaaatggttggaTAGCCAAAAAGGAATGTATGAAATGTTCAGCTGCCTGTCTAGCTTGCAACATCATTttgccaaaagaaaaataaaagagattacatatattttcattttacagaaatatctCTATTATTATCATAACTCCCAAGTGTTCGTTTGTGATTGGATGTTGTTCATTTCTCGGTTACTCTTTTGTACACCATTTGTagataatttataaatgtttatacttaatttacagattttcagacttttttagtGCTTTAAGATTTAATATTCAACAGTGCGTGTTCTCCATGGTGTCTTCAAGAAGAGATGCTCAAGTCTGCAAATTCTGTGCTTGCTCTGtgaattaaagagaaaaaataactTGTTGGTCTATATTTACTGATATGGACTATTGTGTGGCTGTGCATGTGTAGAACtgtgtaaaatatacattttctatgaaaataaatgtgatatttttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212327 lncRNA upstream 178525 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 200677 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 365484 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 365924 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 483434 3803458 ~ 3803769 (+) True G143664
TU212347 lncRNA downstream 180572 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 220067 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 231980 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 257372 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 419863 4751217 ~ 4751510 (+) True G143826
XM_043221520.1 mRNA upstream 778 4283196 ~ 4286425 (+) True LOC122326554
XM_043221737.1 mRNA upstream 58711 4207661 ~ 4228492 (+) True rimbp2a
XM_043221736.1 mRNA upstream 80522 4106787 ~ 4206681 (+) True LOC122326660
XM_043221735.1 mRNA upstream 181051 4102906 ~ 4106152 (+) True stx2a
XM_043221691.1 mRNA upstream 212784 3947068 ~ 4074419 (+) False vav2
XM_043221519.1 mRNA downstream 7618 4338972 ~ 4359303 (+) True LOC122326553
XM_043221210.1 mRNA downstream 179016 4510370 ~ 4520829 (+) True smpd4
XM_043221211.1 mRNA downstream 189611 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221386.1 mRNA downstream 206908 4538262 ~ 4544632 (+) True crkl
XM_043222093.1 mRNA downstream 223004 4554358 ~ 4557626 (+) True nefla
TU212324 other upstream 73431 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 173470 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 582806 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 249697 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 250564 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 251745 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 373847 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 399249 4730603 ~ 4730881 (+) False slc45a2

Expression Profile