RNA id: XM_043221537.1


Basic Information

Item Value
RNA id XM_043221537.1
length 3357
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC122326565
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2618235 ~ 2627353 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAACTGgtgtttaattactttttaacaatactttttaatgcttttctaatACAATATAACAGGCATCATTTTCTTCCTGAGCCATGTTTCCATTACTGATATTCTCAGgTTTCTTTAGCCTCACACTGTGTGCCCCTCAGTATGTCTTTGTCAGTGAATCCAAGACTTGGGGAGAAGCTCAGAAATACTGTAGAGATAAATACACTGATCTGGCCACCGTTGAAAATCAACAACAGACGATTCAGTTATTGGACACAGTGAATAATGATTCCATTGATTTGGCCTGGATTGGACTCTATGATGATCTGAACAGTTGGAAATGGACTCTAGAGGACAGTGATTTCTTCGATGTGGGAGAGAAAGACTTTAGGAACTGGTATAATCCAGGACCAATCAATTATGGAGGACAAAGACTGTGTGTTTCTATATACAATGGGATATGGTATACAGCACTCTGTTCTAATTTGATGTATACATTCTGCTATGATGGAAGAGAAAATGCCACTGCTAGTTATGTTCTCATTTACGAGTACAGAACCTGGGCTGAAGCTCAGAGTTACTGCAGAGAACATCACACAGACCTCATCAGTAtcagaaatgatgctgaaaaccaAAAGATTCAGTATTTATTACGAAATATTCATTATAACTATATTTGGATTGGACTGTACAGAACCTGGTCTTGGTCAGATCAGAGCAACTCTTCATTTACTTACTGGAGCACATATCAACCCGATTCTACAGAATCCTGCACTGTAGTGTCATTTAGTGACTCTGGGAAGTGGACTTCTACATACTGCTATTACGCCTATCCTTTCTTTTGCTACAGTGAATCAGCATCATCCCGTCAGTATCACTTTGTGTCTGAGTCTAAGAGCTGGACTGAAGCTCAGACATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGATGAAATGAACAGACTGATTAACACAGTTAATGGGAGTTACAGCGGCTCAGCCTGGATTGGACTGTATGATGATATAAACAGCTGGAGATGGTCACTGGAAAACAATGATTTCTAtcaagaaggagagagagatttcAGAAACTGGTATCATGAACCAGACAATAGTGGGGGAAACGAACTGTGTGTTTACATgaattataatgcaaaatggTATGATATCTCATGTGACAACACACTGCCATTTGTTTGCTATGATGGTAGAGAGACTGCCACAGAGAGGTACATTTTTATCTATAGTTTGAAAACCTGGTCAGAGGCTCGTAGTTACTGCAGAGATCATTATACAGATCTCGCCAATGTGAGAAATCAGACTGAGAACCAGAGGATCCTTGAGACAGCAGTTGGAGGAGTCTGGATCGGACTGTACAGAAACAGGATTTGGTCAAACAGTCAGAATACTACATATCAAAACTGGAGGCCACAAATTCCTGGGTTACCGGCGCAACCAGACAATGGCAACTCTCAATATTCTGAGTATGGGTTTCAGCACTGTACTGCTGTATCATTCAGATATTCAGGCAGATGGACAGATGAGATGTGTTTATCCAGCATGCCTTTCTTCTGCTACAGCAGAAGCTGCACACAATCTTCATGCACCCGTGAGTATCACTTTGTGTCTGAGTCTAAGAGCTGGACTGAAGCTCAGACATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGATGAAATGAACAGACTCATTAAAACAATACGAGGAACTTACTTTGGATCAACTTGGATTGGACTCTATGATGATATAAACAGCTGGAAATGGTCTCTGGATAATGCAACATTAGAGGGAGGTTTTAAAAGCTGGTATGTTCAACAACAAGAAAATTCAGGTGGacagagtctgtgtgtgtacatgtcAAATTATCAGGGAACATGGAGTGAAGCCTTTTGCTCCTATCAGTATCCTTTTGTTTGCTACGATGGAAACGTGAATGCTAGTTCAAGTTATGTTTTGGTGTACGAGTATAAACCCTGGAGTGAAGCTCAGAGTTACTGCAGAGAACATCACACAGATCTTGTCAGTATCAGGAATGAGATTGAAAACTACAGGGTTCAGTTATTACTTCAATATTATTCAGTTGCTTGGATTGGATTGTACAGAACCAGGTCTTGGTCAGATCAGAGCAACTCTTCATTCAGTAACTGGAAGACAGGACAGCCAGATAATGCTGGAAACAGTCAATACTGCACTGCAGTGTCTTTTAGTGACTCTGGGAACTGGACAGACGAAGACTGCAACATTGCATTACCTTTCATTTGCTACAGTGCAGAGTCAGCATCACCCCATCAGTATCACTTTGTGAATGAGTCTAAAAGCTGGACTGAAGCTCAGACATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGATGAAATGAACAGACTGATTAACACAGTTAATGGAAGGTACAATGGCTCAGCCTGGATTGGACTGTATGATGATATAAACAGCTGGAGATGGTCACTGGAAAACAATGATTTCTAtcaagaaggagagagagatttcAGGAACTTTTATCACGAACCTAATAACAATTTTGGGAATGAACTGTGTGTTTACATGgataataatgcaaaatggtttgatggatcatgtgacagttATAACTCATTTATCTGTTATGATGgcagAATAAACTCCTCTCAGCAGTATGTTTGGGTAACTGAGGTAAGGACCTGGGCTGGAGCTCAGAGCTACTGCAGAGAGAAATACACAGACCTGGCCAGTGTGAGGAATGAGACAGAGCGTCAACAGATACTAAACGTTATGAGTAGTAATTGGTATTGGAATAATTACGGATTTTCTGTGTGGATTGGTCTGTACAGAAACAGACTGTGGTCAGATCAGAGCACCTCTTCTTTTACATATTGGCTGCAAAACAGTCAAAGCTTTGCTGCACAACCAGATAATGGTGCAAATGTCCCAGGAGAGGAGGGAGCTCAACACTGCACAGCTACGTCTTTACAATATTTTGGCCAGTGGACAGATGAGAGCTGCTTTGACAGTCTGCCTTTCTTCTGTTACAGTGCCACCAATTCAGATGCATACGTGATGGGAATGCAAATAAAAGTTACAAGTCTTGAAAATTTGTCTGAATCTCAGATTGAACAGCTTGTGATTATGCAGTTACAAGAGGAGCTGATGAGGCTTGGACTTCCCAGAAACGTCACCATGAATTTAAGAGATTATCGTAAGATTAATCCTTGACAGAGAATGTTTCAACGGACCTGTTAAATCAGTAAAGGGCTTTGTAAgaaaatgaatgcagctttaatttcaattttaacattAACTGTAAAATTGAGCTTACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211774 lncRNA upstream 74928 2487403 ~ 2543307 (+) True G143385
TU211725 lncRNA upstream 128035 2426489 ~ 2490200 (+) True G143349
TU211736 lncRNA upstream 214145 2402747 ~ 2404090 (+) True G143356
TU211734 lncRNA upstream 218166 2399072 ~ 2400069 (+) True G143354
TU211715 lncRNA upstream 279765 2336781 ~ 2338470 (+) True G143340
TU211921 lncRNA downstream 173377 2800730 ~ 2801348 (+) True G143465
TU211940 lncRNA downstream 201761 2829114 ~ 2830356 (+) False gnrh2
TU211960 lncRNA downstream 235419 2862772 ~ 2863017 (+) True G143491
TU211980 lncRNA downstream 302909 2930262 ~ 2937617 (+) True G143509
TU212075 lncRNA downstream 687824 3315177 ~ 3315473 (+) True G143578
XM_043222159.1 mRNA upstream 330947 2280581 ~ 2287288 (+) True LOC122326937
XM_043221760.1 mRNA upstream 561562 2030104 ~ 2056673 (+) True stxbp1a
XM_043222176.1 mRNA upstream 619188 1995787 ~ 1999047 (+) True slc31a2
XM_043221805.1 mRNA upstream 665009 1949736 ~ 1953226 (+) True LOC122326700
XM_043221412.1 mRNA upstream 768750 1830684 ~ 1849485 (+) True zgc:113162
XM_043221533.1 mRNA downstream 3743 2631096 ~ 2656760 (+) True LOC122326563
XM_043221534.1 mRNA downstream 3743 2631096 ~ 2654902 (+) False LOC122326563
XM_043222163.1 mRNA downstream 117534 2744887 ~ 2752853 (+) True smarcb1b
XM_043220869.1 mRNA downstream 154995 2782348 ~ 2784025 (+) True chchd10
XM_043220870.1 mRNA downstream 157120 2784473 ~ 2786135 (+) True ddt
TU211695 other upstream 381040 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1389190 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1462093 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1462093 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1562888 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 319499 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 688403 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 690882 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 987807 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 1074076 3701429 ~ 3704397 (+) False G143650

Expression Profile