RNA id: XM_043221551.1


Basic Information

Item Value
RNA id XM_043221551.1
length 1480
RNA type mRNA
GC content 0.45
exon number 9
gene id abraxas1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4686916 ~ 4690339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTCAGCTTTAAACCGCCGTCTTTAACGCAGAGAATAACTAAACGAAACCTTCAAGCGCAGAAAGTTTACACATGTAGCCTGGTAACTTAAAACTATGAAGTTGAGGTAGTTAACTCGCGGTTTAGCCCAAAAGCATGGAGGAATTCAACACGACCGTTCGCATATCGGGTTTCGCGTTGAGTTCACTGATGTTTCATCATTTGAACAGTGATGCGGATGTGGAAGGTCTTATTCTTGGAGAGAGTGTGGGAGAGGAGAACTGCAGGATCACAGACTCACAGATTGATCACATACAGTTTGAGCACACTTTAAATATACAGAAACACATCCCTTGTCATAAACTCCATAGCTTCTATAGTAATGTCGGTGGCGTCAGCGAGgagaaaataagacaaattTTGTCTGATTACCGAGAGGAGAATGTGATTGGTTGGTACAGACAAAGAAGAAACACCAGACAGCGAATGACTTTTATGGAAAAAGTGGTTCATCAGAATATGAGAAAGATCCTGTCCAATCAGGAGCTTGTTTTCATGCTGCTCACACCGTCTCAGGCCACAGCGTCGGGCTCCACCCATCGACTCGAGTTCTCTGCTTTCATACAGCACAGCAGACAGTACATCAACATCCCCATCTTTGTGAGCAACCTGGGAAACCTGGAACAACAGGACTACTGGGGAGTGTCGGGCACGTGTCCGTCTTTAGGAGAGAGTCGAGCTGTCAATCAACACCGGACAAAATTCTTCTGCTCAGGTGATGATTTAAAAGAGGTGAAAAATATCAGCAGCATGAATGATGCCCTATTGGGAGAAATGCAGGAAGTGTGTGACAAAGTAGAGAAGAGTGAAAGGGCAGTAGAGACGCTTCAAGAAGAGATCAAACAGCTGAAGGAGGAGATCAAGAAAAActcagagaaaaataaaaCCCAGAAACATCCCTCTCCAGAGGACCCCAAAGAGAATGTGCTTCTGTGCTCAGCTCTCAGAACGCTCTTCCCCGATGCGCCTTCATTACGGACACAAACCCTCACTGTTCAGGGTCTCCCTGTATTAGAACTGTGCTGCGGCACCGACCATAACACTGATATCGCCACCAAGCTGCCTCTGATTCTGGAGAACCAACACACCAGAAAGAAGGACACAGCCCCACGACTCAGGAAAAAATGCCTCGTCGCTTGTTATCCTCAAAGACTTAACAGGAAGAGGAAAGCTAAAGACACCAGCGAGTCGGCCTCGGACAGCGGGTCAGACACAGAGATTGAGATGAACGGACAGAACAGAAGCGTCTCTCCGACCTTTTAAAGAACGAAGCCGGGCGTGGTTTTATTGGTACAGCAATCTGGTCACGACTGaaaagcatttcaaattttatacCCGAGGCTACCTTTATCTTAACATGCGTTAAttgtttaatatcttttttgttgtttatttgttagtGTTTATAAATTCCTTGAACATTAAATACTGAATTCACA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K20774 FAM175A, ABRA1; BRCA1-A complex subunit Abraxas

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212368 lncRNA upstream 97764 4588726 ~ 4589152 (+) True G143751
XR_006247494.1 lncRNA upstream 108788 4563334 ~ 4578128 (+) True LOC122326582
TU212360 lncRNA upstream 134448 4551421 ~ 4552468 (+) True G143745
TU212347 lncRNA upstream 162736 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 578238 4106801 ~ 4108678 (+) True G143725
TU212488 lncRNA downstream 60878 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 61568 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 109763 4800102 ~ 4862403 (+) True G143872
TU212577 lncRNA downstream 200799 4891138 ~ 4893087 (+) True G143887
TU212623 lncRNA downstream 324391 5014730 ~ 5028033 (+) False tnksa
XM_043221810.1 mRNA upstream 98458 4585890 ~ 4588458 (+) True nkx6.1
XM_043221811.1 mRNA upstream 98458 4585890 ~ 4588458 (+) False nkx6.1
XM_043221560.1 mRNA upstream 103614 4580634 ~ 4583302 (+) True rpl17
XM_043222093.1 mRNA upstream 129290 4554358 ~ 4557626 (+) True nefla
XM_043221386.1 mRNA upstream 142284 4538262 ~ 4544632 (+) True crkl
XM_043221441.1 mRNA downstream 1853 4692192 ~ 4698582 (+) True helq
XM_043221442.1 mRNA downstream 8387 4698726 ~ 4704776 (+) True hpse
XM_043221443.1 mRNA downstream 14818 4705157 ~ 4709034 (+) False btc
XM_043220714.1 mRNA downstream 30417 4720756 ~ 4729360 (+) True amacr
XM_043221907.1 mRNA downstream 40270 4730609 ~ 4745266 (+) True slc45a2
XR_006247545.1 other upstream 103759 4583099 ~ 4583157 (+) True LOC122327011
XR_006247542.1 other upstream 104926 4581918 ~ 4581990 (+) True LOC122327008
XR_006247544.1 other upstream 105790 4581051 ~ 4581126 (+) True LOC122327010
TU212330 other upstream 300704 4132436 ~ 4386212 (+) True G143726
TU212480 other downstream 14862 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 40264 4730603 ~ 4730881 (+) False slc45a2
XR_006247451.1 other downstream 209151 4899490 ~ 4910505 (+) False fybb
XR_006247485.1 other downstream 257245 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other downstream 257245 4947584 ~ 5025628 (+) False tnksa

Expression Profile