RNA id: XM_043221608.1


Basic Information

Item Value
RNA id XM_043221608.1
length 7237
RNA type mRNA
GC content 0.47
exon number 23
gene id bcr
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3544243 ~ 3602480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcggcggcggcgTCTAGTGCTTTTCATACAGAGGCATTACGTACAGCAGGCACACCAAATCTGCACAGTCTAATTATCAGCGACAAAATGGGATAATCGCGAGAGTCTTTAGAGAATTTCGTTAACGGGAACTAAGCGACCGATCAAggagagtgattttttttattattattatttccagtCAACACAGACGTAAGCACAAAGGGCTTTGGGGATAatggagataaaaaaaatgtcacattatgAACGCAGGACAGCTGGAATACGTCGCCACAGACACGACCGGACCGTATAATTTGTTTAAGGCGACCGGTTTAATTTGAAGCATTTTAAGGAGTATTTTGTTCATCTCGTGCGGTCTGGAGAACAGATGCTGTCATTGTGTTGGGGACCGAGATTTGTGCGCGTGATATTCTGCAAGTGGTCTCGTCGGAATGGTGCGAGAGATGAGACTGCGCGTGCCTTTATTGTTTCCGCGCGACATGCTCAATAACGGTCGTTCTGTCGTTGAACAACTCGAGCACAACGACGACAATTTTGGTACGGAAAGACTGAGACTTCTAGTGACAATTCCAGGGAAATCATGAACGAAGTGTTTTGTAAACGTTTGTATTAAGTGTTATCGAAGAAATACCCTTTATTATGAACGGGCACTGCCGACTTTTCATACTTTCCTCAATTTCACTTTTCCTTAGCTAAATTCCACTTAGTTGGAGATACTTCACCGTGTGTTTCTGACCAATTTGGTATTTTCAAATAGCCTGAGCAAACACAATGGTGGAGCCTGTGGGTTTCATTGAAGCCTGGAAAGCACAGTTTCCAGAGTCCGAGCCTCCGAAGATGGAGCTGAGGTCTGTTGGGGGAATTGAACAAGAACTGGAGAAGTGCAAAGCGTCCATAAGACGCTTGGAAATGGAGGTGAACAAAGAGCGCTTCCGGATGATCTACCTTCAAACGTTGCTGGCCAAGGAGCGAAAGAGCTATGACAGACAGAGATGGGGTTTCAGGAAACCACCTCATATGACTGAAGGGGAACCCCAAGCTGTTGGGGCCGATTCTCAGCATCTCCATGCACAGGAGCAGGGACAGCCAGAGCGCAGCAGGTTTCAGCCTGTGGGGGAGTCCAGAGCGAAACCACGACCACCCCCTGCCAGGAAGTCAGCCTCCCACGGTGATGGATTGGAGCTACAGTCATCATTCGAGGCGCACCAGGCAGGGCCGGTCAGTGAGACCGACGGGCTCTCGCCATCCACACAGAGGGGTGGAGTTTCCCCTCGTAGACCCCATCCACCGCCTGACAAGGAGTTGCCCTCGGATCCGTCCCTCAAAGACAAGCCGGGCATGGGGCTCGGGGTGGCTGCCTTGCGCTCGAACTTTGAGAGAATCAAACGGGCCAACTCACAGTCCGCCAGTGATGGAAAATCAAGCCAAGAGAAACCATTCTACACCAACGTTGAATTCCATCATGACAGGGGCCTGGTAAAAGTCAATGACCGTGAGGTCTCTGACAAAATTAGCTCTCTTGGGAACCAAGCCATGCAGATGGAGCGCAAAAGGTCACTTCATTCACTTCCGGGAAACCTTGCTACGGTCGCAGGTGATCTTCGCCCCAGGCCTGTCTATAGGGGGCGCTCTACCGAAAGCACCTGTGGATACGACGCAGAGTATGAAGACGGTGAACCCAGTCCTCGCTACAGCATTGCGAGACCGAACGGGGCCAAACCACCACCGCCACCATGGCAACCATCAGATTTCCAGCCATACACTAGTGTTTATGTCGGAGGTATGATGTCAGGAGAAGGTGGCGACGGTAGGGTCACTATGAGAGACCATGGAGGAAGTGATGACCATCTTCTCACCTGGCCCAGAAGGTCGTACTCACCCGGAAGCTTTGAGGATGTGGGAGGCGGAGGAGGTGGATACACACCAGACTGCAGCTCCAATGAGAACCTGACGTCCAGTGAGGAAGACTTCTCCTCGGGACAGTCCAGTCACGTGTCGCCCAGCCCTACGACAGCTTACCGCCGCCCCCTCCGAGAGAAGAGCCGCTCACCTTCTCAGAACTCCCAGAATTCTCAGCACTCGTTTGACAGCAGCAGTCCCCCTACACCGCAGACACAGAAACGACACCGGCAGCAACATGTCGTGGTTTCTGAAGCCACCATTGTAGGTGTAAGGAAAACAGGACAAATCTGGCCCCATGATGGAGACTCTATTGCCTCCGGTCGGGCTTCCCATGATAACAGTTACCATGGAGATCTAGATGGTCCGTTTACAGGCACTCCGCCCACCTACGGTTACGATGCGGATCGAGCGGAGGAGCAGCGCCGACACCATGACATTCTGCCCTACATCGACGACTCGCCCTCCTCCTCCCCTCACCTCAGCTCCAAGAGCCGCAGCAGTCGAGACACTCTCTCCTCCGGCTCGATCGAATCATCCAAGTCTGCGGAGTTGGACCTGGAGAAGGGATTGGAGATGAGGAAAAGGGTGTTGTCTGGAATCCTGGCCAGTGAAGAGACCTACCTCAGCCATCTGGAGGCGCTGTTACTGCCTATGAAGCCCTTGAAAGCAGCAGCCACCACCTCCCAGCCTGTCCTGACTGTTCAACAGATAGAAACCATCTTCTTTAAAGTGCCTGAGCTCTATGAGATCCACAAAGAATTCTACGATAGCCTTCTACCCAGAGTGCAGCAGTGGAGTCACCACCAACGTGTGGGAGACCTTTTCCAAAAACAAGCTAGCCAGCTTGGAGTGTACAGGGCCTTTGTGGATAATTATGAACTTGCCGTGGAGACCGCGGAGAAGTGCTGTCAAGCAAACACACAGTTTGCAGAGATCTCTGAGGTAATGCCTACTGGAGTGCTCAAGAGTCTCAAGGTCAGGAGCACCAAGGAGTGCAAGGACCTGACAGCCAAATACTCACTGGAAACTCTGCTCTATAAACCAGTGGACAGAGTGACCCGGAGCACGCTTGTTTTACATgatcttctgaaacacacacctTCTAGTCACCCGGATTACCCTCTCCTGCAGGATGCCCTCCGCATTTCACAGAACTTTCTGTCTAGCATTAACGAAGAGAGCACGCCTCGTCGCCAGTCCATGACAGTGAAGAAAGGAGAGAACCGTCAACTGCTGAAGGACAGCTTCATGGTGGAGCTTGTGGAAGGGGCTCGGAAACTACgtcatgtttttctctttactGACCTCCTGCTCTGTGCCAAACTGAAGAAGCAGATTGGAGGGAAAAGCCAGCAGTATGACTCCAAGTGGTACATTCCTCTCTCAGATCTCACCTTCCAATCTGCAGAAGAGTCTGAGAGTCCCCTGCCTATCCCACAAGCCCCTGACGAGGAGCTGGATGCCATTAAGATCAAAATCTCGTCCCTAAGGAGTGAGATTCAGAGAGAGAGGAGGGCCAACAAAGGGTCAAAAGTCATGGAGAGGCTGAAAAAGAAGCTGTCGGAACAGGAGTCTCTACTGCTGCTGAACTCTCCTAACATGCCCCTCAGAGTACACAACCGCAATGGAAAGAGCTACGTGTTTCTGATCTCATCGGACTTTGAGCGTGCCGAGTGGAAGGAAGTGATCCGAGaacaacaaaagaaatGCTTTAAGACCTTCAGCCTGACATCCATGGAGCTTCAGATGCTCACCAATTCTTGTGTCAAACTCCAGACAGTCCATCAGTTACCCCTCACTGTCAATAAAGAAGAGGATGAATCTACTGGACTGTACGGATTCTTGAATGTAATTGTCCATTCTGCCTCTGGACTTAAACAGAGCTTAAATCTGTATTGCACATTAGAGGTGGACTCCTTCGGCATCTTTGTGAATAAAGCCAAAACAAGAGTATACAGATACACCACAGAACCCAAGTGGAATGAGGAGTTTGAGATCGAGTTGGAGGGCTCCCAGACATTACGTCTACTGTGTTACGAGAAAAGCTACAACAAAGCGAAGATGAACAAGGAGGATGGAGAAAGCACGGACAGAATTATGGGCAAAGGACAAATCGCGTTGGATCCTCAGATGCTCCAGGGTAAGGACTGGCAGAGAACAGTCATCCCTATGAATGGGATTGAGGTGAAGATATCCATGAAGTTCACCAGCCGGGAGTTCAGCCTGAAGAGAATGCCCTCACGGAAGCCCATGGGTGTGTTTGGAGTAAATATTTCCACAGTGACAAAACGGGAACGCTCCAAAGTGCCCTACATCGTCAGACAGTGTCTAGAGGAAATCGAGAGAAGAGGAATGGAGGAAGTGGGCATCTACCGTGTCTCAGGAGTTGCCACTGACATTCAGGCACTGAAGACGGCCTTTGACACTAATAATAAAGACGTGTCAGTAATGATGAGTGAGATGGATGTGAACGCCATTGCAGGAACACTCAAGCTATACTTCAGGGAGCTCCCTGAGCCCCTGTTCACTGACGAGCTCTACCCTAACTTTGCAGGAGGCATTGCTCTTTCAGACAGCGTAGCTAAGGAGAGCTGCATGCTGAACCTCCTGCTGTCTCTACCAGAGCCCAACCTGGTCACCTTCCTTTTCCTGCTGGATCATCTCAAGAGGGTTGCAGAAAAGGAGAGTGTAAACAAGATGTCTCTTCACAATCTGGCCACCGTGTTTGGCCCGACCCTGCTACGACCTGCTGAGAAGGACAGCAAAATCCCCACTAACCCCACGCAGCCTATTACGATGGGGGACAGCTGGTCACTGGAAGTCATGTCACAGgtgcaagttttgctgtatttccTTCAGCTGGAGACCATCCCGACGCCAGACAGTAAGAGACAGAGTATCCTGTTTTCCACAGAGGTCTAAAGGAATCCTTATTTTCATTGTAAGTCTCAAACCGGTGGGAGAGGGATCAAGCAAGCATGTCCACCCACTGGGTATAACAGGACACTGGAATGCACAAGAGCATCTCCTCCTGGGCAAAAGCAGGAGTGCTTCGCCTTTCGCGCATTTTCCGCTAGGGTGCGCCGCAGCCCTTTTAAACGTTATAGAACTGGACTTGCTCGGAGCACATCTTGAACATTACTGAACCCTCCGCCTATTTTTCTCTGAACAGTGTCCGTTCAGCACCTCCGCTCTTCATTTTGTGACCCAGACCCTGAGCACGCTCTCGCGTCCTGTACGTGGACCAGGCATGTCAGCTGGTGACGGTGAATTCTGTCTCTTCTGGCTTTTTTGCATTTGTCCTCATTTCACGTGTCCCCACTGGTCACCGATGCTCTTTCTGTGCTGCTACAATTCAGTATCCAGCTCCAAACCGTTCCAGATTTAGGATCCTTTTATACAATAGGTAATTACATGGCGGTTCAACGTAGTTCTTATTGCAGACTCTTAAAAGTCAAATGAATAGCTTCTGTTAGTGTATGTCAATCATTACAAGAGCTTAATTTAGTAGGATTTCTGTGTAGAAGATGGTGTTTGGTTCAGTTATTGTCAGTGTTGATGTGATTCTAAGTTAACATCGAGAAACAAAcgtaaaaatgagaaaaatctCACAAATTTTCTTCTTCGTTTTTTTGGCCCATACCTCTCTATCGAGCAATATTTAAGCATTCTTGAGTGTGATACATGATACATGTTTAATTTTGCTTTCTTAGTTGAGATTTTGGGAGAGAAATACATTACCAAAAGggtcaatatatttttctttattcagatttttttttacatataaaagaattattatttatttggggACAGATATCAACATCAGTGTCTTTTCAAAGTACGTCTACGTTTATCGCTAACTTATCCGTGTTATGAAGTACTGTAGATTCCTTACATATCCTCTTCATTTTCCTGTCTTTTTGTATCCGTGAAAATGCTCAGAGGATAGCACACAACATTAGCATTTCCCCTGCCTTCTATCTAGTGTTGAGAGATGACCAAACGGAGAGGTTTTTAACTGTCTTTCCCATCCGCTCTCTCTCTAGCTTCACAGCACACTGTGGTTTATGTCTCGCCGAGAACCATACAGCAGTGCCTCTCTGTCTCATCGTAAGAcattaaggttaaaaaaaacaaaaaaaacaacgcTGTATATAGCACAATCTGTTATCCTTGAATCCTGTCGGATTGTTTAATGAAGGAAGGGTTAATCATGGATGCAGTACAGGAACAGTACAGGTCTTTATAGCAATTCTGTTAATTATATCAGTAAAAATGAATGCTCTTaagtttattatttcagttaaaggTGCTTTAGTtactttatttaacatgcaggcatgtttttttttaatgtttgttttgtttttttaagtttgataCGTGTTGTGCGTTTGAGTTGTAACGTTAAACCAAATTCTGGCTACTGTAGAAGGgtttttgaagactttatcGTGCGTACAAGAAGGGGTGcagcaattttaaaaaaaggaacttcTGTCAATCCACCGTCCaaagtcttttgttttttcaataacGTGTGCAGTAAAGGTGCGTCTGAGACTTTTCATCTCGTGTGTCCTCTTTCTTGATTGTCGACACTAAATGTACATTTCCTGTATCTTGCACCTGTCCGAACTGAAGTCGGCATCACGCGTGGGTTTGCCCCGCTTTTGCATCTTTGAAACTCTTGGCATAAATCAAACTGTGATCTATTGTTATCAGAAAACATTCGGTGATTCGAAGCATTCCCGTGGTGTTAATTGcttatttaatgtgctttttatagATTGTTGAATGTTACCGAGTAAGGAATATTGGACACACGCTCCGGTTTATTGGGAGTGATACAGCGCATGATGTTTGAGAGGCGATTTCTTTGCACTGCACATAGTTTAAAGACTAATGTGATGAAATTTCTTTTAAACGTAATGAGATTGTATCACACAAGTCTACAAACAAAACCTGCATTAGACGTTATAATCttcagatttatttgtattcacaAAGTATTCGTTTTTAATTGGTTGGTCATGAAAGCACTGCAAGGCTCCATCTGTGTCGTCCATTACAATGTTATGATGGTTTATGTTCAAACCTTGCCTTTAAACACATGAAGACATGCTGGACAGCCACTGGGACAGGCTGTGGATGCCCTCCCCTTTTCCTCTTAAGGTTTTTGTCACTATTTATTCTTGCTAATATCTTAATGTTCTGGTTATAGGACTGTACAAATAGATAATGAATTCTGCAGACTGAAACGTTTGGAAGGCATTTGCTGCCTATGTTTATAcacaaaatgttgaataaaacCTCCTGTATATGAA

Function

GO: NA

KEGG:

id description
K08878 BCR1, BCR; breakpoint cluster region protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212097 lncRNA upstream 51656 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 51678 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 51678 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 207554 3336261 ~ 3336689 (+) True LOC122326852
TU212075 lncRNA upstream 228770 3315177 ~ 3315473 (+) True G143578
TU212176 lncRNA downstream 6439 3608919 ~ 3610050 (+) True G143638
TU212203 lncRNA downstream 149119 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 160852 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 200978 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 317253 3919733 ~ 3921719 (+) True LOC122326258
XM_043221006.1 mRNA upstream 1505 3514033 ~ 3542738 (+) True atp2a2b
XM_043221151.1 mRNA upstream 38656 3503222 ~ 3505587 (+) True arpc3
XM_043221148.1 mRNA upstream 41501 3499645 ~ 3502742 (+) True gpn3
XM_043221150.1 mRNA upstream 47015 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA upstream 47015 3493993 ~ 3497228 (+) True LOC122326336
XM_043221479.1 mRNA downstream 14559 3617039 ~ 3634175 (+) True tsc1b
XM_043220941.1 mRNA downstream 134901 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA downstream 134901 3737381 ~ 3748407 (+) False stom
XM_043220943.1 mRNA downstream 134903 3737383 ~ 3748407 (+) False stom
XM_043221653.1 mRNA downstream 184279 3786759 ~ 3918707 (+) False rxraa
TU212079 other upstream 224364 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 226348 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 597320 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1307048 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2315198 1228013 ~ 1229045 (+) False LOC122326311
unassigned_transcript_2519 other downstream 12680 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 98949 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 98949 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 98949 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 504321 4106801 ~ 4113733 (+) False G143725

Expression Profile