RNA id: XM_043221651.1


Basic Information

Item Value
RNA id XM_043221651.1
length 4610
RNA type mRNA
GC content 0.46
exon number 12
gene id rxraa
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3786759 ~ 3918707 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCCCTTCACTGGGTCCCTTTGCAGTAGTGTGGACTGGAGAGTTGTAGACAGAGCCGAGCAGAAGCGTGAACAAACAGAAGTAGTGCCATAAAGTGAACATTTGACACTATCGCAAAGCTTTTTACTTTTACCGCGTGGATCAGTCTTGTACTGTCATCAGAGAGGGACGCCGACAGCTTACAACGCGCGCGCGTCAGCTGGCATGAGCTAACCCACCAGACATGGAAACCAAACCTTTCTTGTCATTGGGGTTCCTGAAACCCCAGTGCTCGATACCACCGCCACCTCAAAGAGGACGAGCAGAAGCATGCACATGTTTCAGCGGAATGTGCGCTCTTCATCAACGCAGGCTTTCTACAGACTTGTTAATACCAAGGACCCCCAAATGTGATGATCCCTTTAGACGGACTCCCTTCCATAAATATAAAGACTCCTCGGGACAGATGACGTCCTCTCCTCTTAGCTCACCTACGTCCCACCGGGGGATGCATCCATCACTGCTGAGCCCGACTTCATTAGGCCCCTCGGGGTCTCTGCACTCCCCTATCAGCACTCTGAGCTCACCCATGAACGGCCTGGGCTCTCCCTTCTCTGTCATCAGCTCGCCCATGGGGCCACATTCCATGGCGTCACCAGGGATGGGCTACGGCCCCAGCGTCAGCCCACAGCTGAATTCGCCCATGAACTCTGTTAGCAGCTCAGAAGATATCAAGCCGCCCCTAGGCCTCAACGGTGTGATGAAGGTGCCAGCCCAGCCCTCGGTTACCCCCCTTTCCCTCACCAAACACATCTGTGCCATCTGCGGTGACCGCTCCTCAGGTAAACACTATGGTGTGTACAGCTGCGAGGGGTGCAAGGGTTTCTTCAAAAGGACTGTGCGTAAGGACCTGACTTACACTTGTCGAGACAACAAGGACTGTATTATCGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTATCAGAAGTGTTTGGCCATGGGCATGAAGAGAGAAGTATTATTACATACAGCCGTCCAGGAGGAGCGCCAGCGAGCCAAGGACCGCAACGAGAATGAGGTGGAGTCGACCAGCAGTGTGAACGAAGACATGCCTGTGGAGAAGATCCTGGAGGCGGAGCTTGCTGTGGAGCCCAAGACGGAGACTTACATTGAGACCAATGTACCGATGCCCTCGAATTCACCCAATGATCCAGTCACAAACATCTGTCAGGCCGCAGACAAGCAGCTCTTCACTCTGGTGGAATGGGCCAAGAGGATCCCGCATTTTTCAGAGCTCCCGCTGGACGACCAGGTCATCCTTCTACGAGCAGgaTGGAATGAGCTCCTCATTGCGTCATTTTCACACCGTTCAATAGCAGTGAAAGATGGGATACTGTTGGCCACAGGATTGCACGTGCACCGGAACAGCGCCCACAGCGCCGGAGTAGGAGCCATATTTGACAGGGTGCTGACTGAGTTGGTGTCAAAGATGAGAGACATGCAAATGGATAAAACAGAGCTAGGGTGCCTTCGAGCCATTGTCCTTTTCAATCCAGACTCTAAAGGCCTGTCAAACCCAGGTGAGGTGGAGGCGCTCAGAGAAAAGGTCTATGCCTCTCTGGAAGCCTACTGCAAACAGAAGTACCCTGAACAACCTGGAAGGTTTGCTAAGCTGTTGCTGCGGCTCCCTGCCCTGCGTTCAATTGGATTGAAGTGTTTGGAGCATCTGTTCTTCTTCAAGCTCATAGGAGATACGCCCATCGATACCTTCCTCATGGAGATGTTAGAAGCGCCCCACCAAATGACATAATGACATAACGTCCTCCTGTCGCCGGGGGGGACACAAGGGTCTGCCACCCCAAAGGCCCCTTAGAAACTGAACACGTGACACCATTTGCCAGAGCAAATTAACTTTCAGAACCAATACAAAGTCATGGCGTCCATGGGTCTGTTTTATACTTtgtataaagatataaatatatacacgcaagaaaaaaagatgacaatGGACTTCAAGCCCACAGACAACAGTGGACACGGGTGTATCAAACTATCCTtcacatatgaaaaaaaaaatacgataGATTTAGTGGAGGTGCAGTAATTGCAGGAATCTTTTATGCAGGGTCGTGTACGTTGGGATATAATGGGTCTAATGGGAGGGATCCAAGGCTGTAATCAGCCTCATTCAGGATTGGATAGGGCCATCCTGGGCTGGCGTGTCTGGGCACATGAAGACTTAtgggagatgatgatgatgatgatcgtGGAAATGCGGGTAATAATCTGGGTTTCTAACACAAACATTGTGTTTTCAGTCCCTGGTGGGAGTTTTTGCGATTACAATCCTGCTCGAATTgccgtttttttccccctcaagcGGGCTGTTCCTGATAGAATGTTCTTGTAATTACTGTCATTTAAGAAGCCAGTTTGCTCTGAACCAAGTGAGCATTATCTGTGGTGTGTGGGAGACGCAATAAGGACGTAACTTCAGGATCAGACAGGAACGGGCCGCCTGAGGTCGATGGGAGCAGATCCCAGCATCTAATGAGCCACCCTGAGCTTTGGATTATGATCATTCACACTTTTTCATTATGCACTCGAAACatgagcttttaaaaaaatcaaatctgcCTGTTCTCACAGAAACCCGCGATTATGATCAACGTAAACGAAGGACGCTTATAGCGGACATCCTGCCACCTGTGAGCCGCCCACATGTCCCACTGTGTCTCGTCTGTATACCAATACACCTCAAGTGGTTTTCCAAACGAGCTTGACACTTGTACAGTTTATTACAACCAATTCAGTATTGGTATCCTGTATTTTTTTGGAGGATTTTTCAAAATGCGTGACGTTACCTCTCTTTCGGTCACTTTTACTATGGTGTAGTCTTTTGTGTCCCCCATCCACTCCTGTGTCAGCCGTTCACACGAGCCGCCTCATGCATTCAGGTCTTGCAAATGTTTGTTATCATTAGGATGTTTCTAAGCACTTAACCTCATGTTTCAAGTCCCATTGTTGTGTTTCTGGGGCTGCCTTTTTATTATGAGGTATCATCTGTTTCCTGGGTCTGTAATTTGCCATCTTCcgcattttctttattttctgtatgctgctgctgctaaactatgcatttagcatttttcttttcccaAAGACTGTCCATGGTgaggttgatttttttttttcaaactctgGCAAGGAAAGACCACATGTGAACAAGGTTACACCGCCAGGACCAAGATTCGGGTCTCCAGCAGTATATAGAGAGCTATTAGGAGTGGAGCAGTACTGGTTGAGAATAATACTGAGGCAATGGGAGAGCTGAGACTTCCACCTAGTGGTGGAGATACAGCACTGCAACATTACTTGAATTTTGTACAAGTATTTAATTGGATAAAAATGGCACTTTTACGTGATGTtatcaatgtttgtttttgtttgagtgCAGTCTCAAAGGGGTCTTCAGCAatagcttgatttaaatcactCGATTTGGTTTATCCAGAGGGAAGCCCAAGCAACTTCGGTCCATGCCGTTTCTTTAGGATGCGTCTCCATTTCTGAAAATCAGCTTTTCGTCCTCTTACCCTCATTTCCTTGCGTGGCAAATGAATTTTAATGGCTTCGCTagactttttaatgaatgaatattttggATCACCGGTGACTTGAAGCCATATTCAGGTTTGAGATCAAAAACTTTTCTCCTGTTGGAAATGGAGCAATGCAGAAACGATAACCTAGATAGAATTAATACATACGCAAATGCTTTATAACGTAAAGCTATATTTTGTctatatgtaaatgtgtgtatatttctaaatatgaaAGTATATAAATCCATTCTTTAAATGTTTCCGAAACGATGTTATTAAGGGAGCCAAGcgttttttcttaaattgaCTAAAACCAGGCCTAATTGCACTGTTGTATTCTCAAATgctagaaatgtttttaattgctgaagCTTTTGTGTTCAGCCTTGAATTACACACACAGTTAAATTTTAGACTAATACCAGCAGTTGAGAGCCCTAAGAAAAGATCCTACACCAGCTCCTTGacttatgaatcattttatgtTCGCAAAAACCTCAAACAAATGTCTCGTTGGTGGAAAGAAATCGAAAGGAACCCATCGCTTAGCCACTTTCCCCCCCGCAATCTAAACTAGAAAGGATAAACTTTGACCCTGACACAGTCACCGCTTCAGTCGTCACAGAGACAGGACCTTTTAAAAACGTTGAGAAAACTAtaggaaaaaaatctatttttgtacaaatgtaattttatccCTTGCTTATATATCCTCCCTTCCTTCCTCTTTCTGTGGGCTGTTGTATACATTGTGTAAGTGTTGATTTGAAGTGGGGAAAAATTCAAATCGGAGCATTTGAAAGTGGATTGTGTGAGGGATGATGTCAACTCCGACACCTTCACCCTTTTCACCTCCACTTTGCCTTTTGGTTTCCTTCTTTCGCCATCTCAGAGAGAAGGACTGTCCTCTCATcatattttgtcttatttttacgGAAATGAAAAAGTCATCTGTTCTACTTTGTGGGTTGTTCTTTGATGTTTTGTCTTTCAATCAAATTAAACGTCTAATTCAAAATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212214 lncRNA upstream 23469 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 57682 3763332 ~ 3769556 (+) True LOC122326834
TU212203 lncRNA upstream 75040 3751599 ~ 3752198 (+) True G143656
TU212176 lncRNA upstream 217188 3608919 ~ 3610050 (+) True G143638
TU212099 lncRNA upstream 334673 3488511 ~ 3492565 (+) False G143590
XR_006247456.1 lncRNA downstream 1026 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA downstream 2373 3921080 ~ 3921279 (+) False LOC122326258
TU212299 lncRNA downstream 156820 4075527 ~ 4086526 (+) True G143717
TU212327 lncRNA downstream 188094 4106801 ~ 4108678 (+) True G143725
TU212347 lncRNA downstream 593219 4511926 ~ 4524180 (+) False si:ch211-222n4.2
XM_043220941.1 mRNA upstream 78831 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA upstream 78831 3737381 ~ 3748407 (+) False stom
XM_043220943.1 mRNA upstream 78831 3737383 ~ 3748407 (+) False stom
XM_043221479.1 mRNA upstream 193063 3617039 ~ 3634175 (+) True tsc1b
XM_043221609.1 mRNA upstream 224758 3544243 ~ 3602480 (+) False bcr
XM_043221140.1 mRNA downstream 18671 3937378 ~ 3945807 (+) True brd3a
XM_043221141.1 mRNA downstream 18671 3937378 ~ 3945807 (+) False brd3a
XM_043221142.1 mRNA downstream 18671 3937378 ~ 3945807 (+) False brd3a
XM_043221682.1 mRNA downstream 28359 3947066 ~ 4074419 (+) True vav2
XM_043221683.1 mRNA downstream 28359 3947066 ~ 4074419 (+) False vav2
TU212191 other upstream 122841 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 122841 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 122841 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 212007 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 507359 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 188094 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 213729 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 290553 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 662344 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 663211 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile