RNA id: XM_043221688.1


Basic Information

Item Value
RNA id XM_043221688.1
length 5360
RNA type mRNA
GC content 0.46
exon number 29
gene id vav2
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3947066 ~ 4074419 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGGACGAGCGCGACCGGAACCCAGATGCAATCTCTCCGCCGCGCGCCCTTTCTCCTGCTCCGCGCGCGCTCACGCTTGCTCGCACTCACGGCTCACGCGAGCGGAGAAATCAAAACACTTGAACCATCTAACGTTACGCAGAGGTGAACTGAGAAACAACCGAGAAACCGTCGCGACTCGAGGCACGACTGTCCAGCACCAAGACCTCTCGGCGTTTCTCTTTCCGTGGAAGCGAAAGGAGCAGGGCGAACGACAGTTTTCGCGTTAAATACGCCAGAGTTTGTGCGTTTCACTGAACGCTGTGATATTTCCCTCAAgaagtttttaaaacaagtttggACCGGATTCTGTTTGGAGTTGGACGTTATTTAACGTTAACTCTGGTACACATCCCGCCTGGCGCGCGAGCGCTTGTGAGGAGCTTTCTGCCGAAGACTACAAAACATggatttattctttattttaacgGTGAAACTTTGACAAACCGCCCGAAATTGCGTGCGACGGCTGCTCTGCGGTCTTTTCCAACGTTTATTGTTAAGGAACAAATCTATTGTAGTCCTGAGagacacatttttttactgtgaCAGGACGCGTTTACGGAGCCAAATATGTCAGTCCACGATGAAGAAGAGGAAACTCATTTGATTCTCTGAGGGGAAACTcatctaaataatattttaacaccGCGCTGCACGACATTTCTTCGAGTTCTCCTTTATTTTAAGCTTAGGAATTGGATTGTTTCGTTATACAAAGTCCAGAAGCGCTATATAGCGGATAGCACTCGGCTGGGCTTAATTCTTGAAAAAGTTGTTAAGCGTACATCTTCGTGAAGATCGTTCTCACGTAGTTGACCGCAGGGACCTTAGACACTTCAGTGCCCTTTGGACCAAAGGGGAACTGGGATATTTTCACATCGGCATTATCCTTGTACGTGCTGTCAGACATATAGTTTCATTTTTGCCAGCGTTCTGCATCTTTTGTGTCAATATGGAGGAGTGGAGACAGTGCGGTCGCTGGTTGATAGACTGTAAGGTTTTGCCCCCCAACCACCGGGTCGTTTGGCCCTCAGCGGTGGTGTTTGACCTGGCCCAGGCGCTCAGAGATGGGGTGCTTCTGTGCCAGATGCTGCACAATCTGTCTCCTGGATCCGTGGACCTAAAGCAGATCAACTTCCGGCCTCAGATGTCACAGtttctgtGTCTGAAGAACATCCGAACATTCCTGAAAGTGTGCCATGATAAGTTTGGCCTGAGGAACAGCGAGCTGTTTGATCCCTTCGATCTCTTTGACGTGAGGGACTTTGGAAAGGTGATCTCTGCTCTGTCCAGAATCTCCCACAACAGCATCGCCCAGATCAAAGGCATCAGGCCCTTTCCATCAGAGGACACAGCGCTGAATGAAGATGATGTGTACCGGAGCTTGGAGGAGCTGGCAGAtGAGCATGATGTGGGAGAGGATGACATATATGACTGTGTCCCCTGCGAGGACGATGGGGATGACATCTATGAGGACATCATCAAGGTGGAGGTTAGACAGCCCATGATCAGATACATGCAGAAAATGGGCATGACGGAAGATGATAAGAGAAACTGCTGCTTGGTGGAGATTCAGGAGACAGAGGCAAAGTACTACAAGACACTGGAGGACATTGAGAAGAATTATATGATTCCCCTAAAGCAAGTGTTAACACAGCAGGATATGGAGGCCATATTTGTGAATTTAGAGGACATCATCAAGGTCCATTTTGCTCTGTTGAGGTCCATTGACCTGACCATGGTGAGCGGGGGAAATGGCTTGGGAAAGATCTTTCTGGACTTCAAGGAGAGACTGCTGATCTACGGCCAGTACTGCAGCCATATGGAAAACGCCCAGAAGACACTGGATGAGCTGATTGCCACACGGGAAGATGTCAAGTGTAAAGTGGAGGAATGTACCATGAAGGTCCAGGAGGGAAAATTCAAACTGCAGGATCTCCTAGTGGTCCCTATGCAGAGGGTCCTCAAATACCACCTTCTGCTTAAGGAGTTAGTAAGTCACTCTATGGACCGCCCGGAGAGACAGCAGCTTAAAGAGGCACTAGAAGCCATGCAGGACCTGGCGATGTACATCAATGAGGTGAAGAGAGACAATGAAACCCTGAAGAAAATAAGTGAATTTCAGAGCTCTATAGAAAATCTACAGGTGAAGTTAGAGGAATACGGCAGGCCGAAGATAGATGGAGAGCTTAAAGTGTGCTCTATAGTTAACCGAACCAAACAAGACAGATACATCTTCCTGTTTGATAAAGTTGTGATTGTTTGCAAGAGGAAAGGCTACAACTATGAGCTAAAAGAGATCATTGAGCTTCACTTCTACAAGATGTCTGATGACCCTATGAATAACCGTGACATGAAAAAGTCGAGTGGAAAAATGTGGTCCTATGGCTTCTACCTGATCCATCTGCAGGGGAAACAGGGCTTTCAGTTTTTCTGCAAGACAGAAGACACAAAGCGCAAGTGGATGGAGCAGTTTGAGATGGCCATATCAAACATCAAACCTGAAAGAGCCACTGCCAACCAGCACAACTTCCAAATGCACACATTTGAAAAGAACACCAACTGCAGAGCCTGTAAAATGCTGCTGAGGGGTATTTTCTACCAGGGATACTACTGTTCACGCTGTGGGACTGGCGCCCATAAGGAGTGTCTGGAGGTCATTACCATCTGCAAAATAAGCCCTCATGATTCGGAGCCGGGGCTTCCACAATCAgGTCCAAAGATGGTGGCCATAAGAAATTACCATGGTACCCCTGCCCCACCAGGCAAGATGCCTCTCTGCTTTCAGACAGGAGAAGTCATTGAGCTCTTGAAGGGAGATCCAGACACATCATGGTGGGAgGGCAAACTCATCCAAACCCAAAAGACTGGCTTCTTCCCCAGTTCCAGTGTGAAACCATGCCTAGACCCAAAGCCTTTCCAGTCATTTTCCAGCCGTCAGTCCTCCAGAGAGATGGATTACAACGTTTATCCCTGGTTTGCAGGAAACATGGAGCGACAGCAGGCCGACAACCTGCTTAAGTCTCACAGCAGCGGCACCTATCTGATCCGAGAGAGGACGGCAGAGGCTGAGAGATTCGCAATCAGCATCAAGTTTAACGACGAAGTGAAGCATATTAAAGTTATTGAGAAAGACAACTGGATTCACATCACAGAGGCAAAGAAGTTTGATAGCCTCCTGGAGCTTGTGGAGTATTATCAGAGTCATTCACTGAAAGAGAGCTTTAAGCTGTTGGACACGACATTACGGTACCCTTACAAATCCAGGGAACGCTCAAGTTCTCGCACCAATACCCGTTCACCAGTATTCACGCCCAGGGTAGTCAGCACAGCTGTGGCGCGATACAACTTTGCTGCCCGAGACATGAGAGAGCTGTCCCTGCGAGAGGGAGACACTGTCAAGATCTACAGCAAGATCGGTGGAGACCAAGGCTGGTGGAAAGGAGAAGCCAACGGAAGGATTGGATGGTTCCCCTCTACATATGTCGATGAGGAGGGTGTGCAGTGAAACTCTGGGGTCAAAGACCATCCAATCAAATCCACAACCCTTTGATTTCCATGGCAACATCTCATGGAAGACTTTTCGCTGGaaacatactttaaaatgaatatttgtacTTCTGTCTTCTTTCGTCATGTACGAATAtgcttttttccctttctcGGAATGTCTGTGTGATCTCTGTGAAGAAAACTGCTCCGAGTCTGTTCGTTCTCAGAGGTGGGAGAAGGAAACTGTGAACAGAGCAGAACTTTGCCTTCAAGTGGCCAAAGGACAAGCATGGCTTTAAGTTTGTACAGAAATACCTGTAAGGTGCGCTGGGGTATAATGGGGAGTGGgtatgtataaaattatatataaatataatttattaaagagATATATCTATGATTAAAATGCAATGCTGAACATTTGTTCAACGCCAGCAGCGCAAAGAATATAGTATGAGAGCAGAAAAGATGCACTTTGCATTTCTTTACAGAGAGAATTTGCCTTAGTAAATGGTAATGCCTTTAGAGGTGGAGGTAAAGAGATGGATTCAGACTCATCTTGCACATACACACTCGTACATCTGCCCTGTCCAGAAATACGGTGCCTTTTTGTACATGTTCTTCACTCCCAACAGAGTCTCGTTTGAATAGCTGCTGCATTATTGCCCTGTTCGGTAGCGGTGTACTCTCACGACCCTATCCGCTCGTTCGGCTGGACGCTGCTCAACCAGAAGACCGTAAAAGAGACCGAACATTTCCTGAACTGGAACGAGCAGATGACCAGATCTGTTCATCATCTCACTGGAACGAAGGGGCAGCTAACCGAAAGGTCATGGTCATGGCTGCAATCGCTTGGACAGTGAAGGATACGAGCACCATCACGCAAAAGTGCAATGGAGTATCGGGACGAGGTTCGGTGAACGCTGTTTCTGTGATTTCTACGTTCTCAGTGGTCTGAATTTGGACTAAAAAGGGAACGCTGAATGCTGTTCCGTGCACTGATTTTCATGAATACCCAGAGGTTTTCTTGTTGTCTTCTACAAGCACAACCATTTTGCCATTCCACGTTTCTCGTCTGCAGCCTTCCACATTACAGTATCTTGCCTTACTGGTGGACACAGCTTGGTGCTACAGTGCTACATATTGAAATCCCTGAGTTAGGGCAGAATTTTCTTTTACGCTGTTGTGGACGAGGAGGCCCACTGCTGAAGAACCTCAGCCATCAAGTGCACTTTATATGTCCAGAGACCTTTTAACACAGGACACCACACTGCAGATCTGGACATTTAAAATTtcctattatttaaaattgtttttgaaatgtccTTATTTTTAcctctgggaaaaaaaaaaaaaaaaaaaagtaaaatcctTGACACTATGAGCAGCGCTCCCTCAAAGTTGAACATTACCTGTAAACTCCGTAAGTGCATGGATGTGTCCCTCATACAGTCCTTGAAGAAAAACCTTTTGCCGTTGCCAGCCATTAGAAATTGAAGCAGTAAATGGAGACTGGAGAGTGCCAGACTGTAATAAAGCATCGGACGTGTTTTAGCTGCGCTCTAGGCATGAGTACAGCTGTCTGCAGCTCAGGTCAAGGTAGCGCTGGCTTTGGGGCTTAGTACCTGTTTGTGtagtggacaaaaaaaaaacccattgcaTGTGGTCATAGATATTACAACTGCtgtctgtgaatcctgaaaaaaaagatgtaaaaaaaaaaaaaaaaaaaaaaaactaaacaagaaattgtgtacatttttttgaatggtCAGTTATTTGCAAACTGAGGTCtatcatgaaataaatatttcttttttgccTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247456.1 lncRNA upstream 25348 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 25788 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 143298 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 177511 3763332 ~ 3769556 (+) True LOC122326834
TU212203 lncRNA upstream 194869 3751599 ~ 3752198 (+) True G143656
TU212299 lncRNA downstream 1108 4075527 ~ 4086526 (+) True G143717
TU212327 lncRNA downstream 32382 4106801 ~ 4108678 (+) True G143725
TU212347 lncRNA downstream 437507 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 477002 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 488915 4563334 ~ 4578128 (+) True LOC122326582
XM_043221140.1 mRNA upstream 1260 3937378 ~ 3945807 (+) True brd3a
XM_043221141.1 mRNA upstream 1260 3937378 ~ 3945807 (+) False brd3a
XM_043221142.1 mRNA upstream 1260 3937378 ~ 3945807 (+) False brd3a
XM_043221651.1 mRNA upstream 28360 3827238 ~ 3918707 (+) True rxraa
XM_043221735.1 mRNA downstream 28487 4102906 ~ 4106152 (+) True stx2a
XM_043221736.1 mRNA downstream 32368 4106787 ~ 4206681 (+) True LOC122326660
XM_043221737.1 mRNA downstream 133242 4207661 ~ 4228492 (+) True rimbp2a
XM_043221520.1 mRNA downstream 208777 4283196 ~ 4286425 (+) True LOC122326554
XM_043221521.1 mRNA downstream 212784 4287203 ~ 4331354 (+) True LOC122326555
TU212191 other upstream 242670 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 242670 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 242670 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 331836 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 627188 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 32382 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 58017 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 134841 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 506632 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 507499 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile