RNA id: XM_043221727.1


Basic Information

Item Value
RNA id XM_043221727.1
length 4307
RNA type mRNA
GC content 0.39
exon number 4
gene id gcnt4b.2
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2831751 ~ 2837249 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatagatttgtAAAAGGGAAGCAGCGAGTGAGATATCAGCACAGCACACCCAATAGATTTGGTACACTTTTCCTAGTCTTTTTCTAGCATTTTATATGGGTTTTGTAAAGTCTTTACACTCGGAATTAGccatttgtttttagaaaatctcCATATTTCTCTTCTTATGTTCTCGGATCACGCCCATGCACCGACCCGGAGTCACGTGGGGTTTGGAGAAGAATGCCAGAAGTTTGAAGTTCTGGAGGAAGTATGCAACGTTATCAGACCAACCCAAGCTGGATTAAAGGCTCCTGTCAAGTTATGGAACCGGGCAAAATGCGTGGACTTTGGCTCAATGATGAAAGAATGTGGTGATGCTGCTCATGCTGACCGAGCTCACGCTCATGTTCATTCAGAGGGGAGAGCCAATGCTGCTGGCCTCAAAGCATCGTAAAGAATGAGAAGATTGTGGCTCCGCCTCAAATTGAGAAATGTGATATGTATCGCTTTAACCCTGGCACTTCTTATATGTTGGTTCACAATCTCATTTTCAATAGTCAAAGAAGGAGAACAGGAAACAGGACTGTCTGAGAGCCTGCGGCTGACAGAACAATATGGCATTAATTGCACGGCGATATATGAAATGGAACCGGTGGAATTGGGCAAAACCTTAGTCATTCGCAAGGAAAAAAGCTACGTAGGGCAAACTGACAGAACTATTGTGAATGCCACCTATGACTGTGAATGGTTTGTTGGGTCACGGGGCTATGGTATGATGGAAGGCTCTGAGTTTGAGCGTCAATTTCCTCTTGCTTATTCTTTGGTCGTTCACCAGGACGCTGCTCTTGTGGAGAGGTTGCTCAGAGCCGTTTATATGCCTCATAACATATATTGCATACATTACGATCTGAAGTCCTCAGATGACTTTATTTCAGCGATGAAAGGTCTGGCCCGTTGCCTCCCCAACGTCTTCATTGCTTCAAAGCTGGAGAGGGTGCAGTACGCTGGCTTCTCGCGACTCAAAGCCGATCTTAATTGCCTGTCTGACCTCCTCCATTCTGAGGTCAAGTGGAAGTATGTCATAAACCTGTGCGGTCAGGACTTTCCACTGCAGACGAACGCTGAGCTGGTGTCGGATCTAAAAGAGCTGCAGGGCAGGAACATGGTGGAGAGCAAGAGGCCTGGAGGAAAGCAATGGCGCTGGACTTACCATCACTTAGTGAAAGATAATAATTCACAGTACTACGGCTCACCTGTCACCACTTCTGAGAAGAAATCTCCACCTCCTCACAACATAGCCATGTTTGTGGGCAGCGCGTACTTCACACTTTCAAGAGAATTTGTGGCTTTTGTTAACCAGAGTTCTGTAGCCAAGGATTTCTTGGCTTGGACTGAGGATACGTACTCACCTGATGAACACTTCTGGGCAACTCTGGTCCGTGTGTCTGGAGTACCAGGAGAAGTGCCGAGTTCTGACCCTGAGATCTCAGAACTAGCAAGTAAAACCCGTCTGGTGAAGTGGTCTTATCTAGAAAGTATTCATTACCCACCATGCACTGGAGTCCGTGTACgagctgtgtgtatttatggcGCCGCTGAGCTCAGGTGGCTCCTGAACTACGGACACTGGTTCGCTAATAAAGTGGATCCAAAAGTGGATCCCGTTCTTATGGAATGTTTAGAAGAGATGCTTTCAGAAAAACGCCTAAGGGCAAACctgctgtaatttttttattttattttactagaGAGACTATTGAATTGatcttaaaaaaacactgctgtTTTTAAGGGAAATCAATATTAAGTTGAGTAATTTATTTGGGgtttctggtaaaaaaaaaaaaaaaaaaaaaaaaaaagtatttttacttatgTGATTCAGCCAGCATGAGAGCAGTTCTTTGACAAGGATTTTTAGGGTTTATGCCAGTCCTCTTAACCTTTTAAGTACACTTGTTCTGTTGTGTATGAGACATAGAGTAACATAATATGagacaaaatgtgatttttttttacagcaaagtgaaaaaaaaaattctagttcaacaaaaatgtagtaaaaaggAAAGCAGCGCGCATTCGTTCAATGTTGTCGAAACATTAGTCTCTCTAAGCAAATGTTATAAAggaacagaaaacaacaaaaaacaaatcagttgaaaatgtactcaccctcgggCTATACAATATGCAAacaagtttgtttcttcatctaaTGGATTGGTGcttgaaagaaacaaaaccatCAAGGcgttttaacttataagagttTGTAGTCCATGATAATGCTTTATTCAGTGAAAAAATCCATCCACTGATGCTTTACTACATCAAAATCCACTGTCATATTTGTTTAGACCTGTTTTAGGCTGATTTGATTTTGtcatatttctctcctgtttCAGATGggatgactttttcactggagaaagctaCATTATGGATAGGGGACTTTGGAAAGTAGTATTTTAACTGGAAACAACAAtggatgtgtttattttaagcgTCCAGATTTTCTATTCACACTGTTATTTAGATCTTCATCAGCCGTTccctctcattctgacggcacccattcaataCAGGGGAGATCCATtggtaatgctacatttcttcaaatctgttctgaagaagaaaatgaactctcgggatggcttgagggtcagtacattttcaacaaattttaatttttgcatgaaaaaacaattacaatggCAGGAAGAAAATCTATATATTGCTAAAACTCAAATGGAGAAGGGCTTTATGTTGGTTCAGTGCAATGAATTGTCGATTGGTGGCAAGAGAGTGTcctgtaaaacatatttattctcaAGTCTCGAGAGATTCTGCGAGTGTTCACAGCCAGGACTCTGGTTGAAAATCTGAATTCACGTGTTGTGTGCTTTCTTTGCCACATTACAGACTTAAGCAATAATTCCCTCAGGATGAATTTGCATGCGTTCACTGGGTTGCTATTGGGCTAGATTCACAGAagcaataatgcaaataaagtaAACACAACCCCTAAAACTAGTCACAATTTGCATGTTGCAATTTCTCATCTTGCAAGCCGGTTTGCATCCGTGGATGTGGTATACATTGCTCTAATGCAATGTAGGCAcctaaaataaatagctttttgaTATTTAGAAAGTTTGCTTaacttttgttagtttttttcattgtgaaacTGTATTCGGGTTGGTTAGTGAGTAAGTTCCAGTAATGGCTGAAAAACCTGAAAAACCGCATAAAAGGACCCCTGAGCATGAAACCCGTTTTGTTCAAGAATTTCCTCTTgtagagtaaaaaaatacattctttattttcaataatgcatatttttgtacattttatacctatttttgcacacaaaatgaAGGGGTGAATATTAAAATTCCTGttgtttttaatctctttaATAATCGTCTGTGGTATACTGAtatattgaataatttaataacagaGGTATTAATTTCACATGGTCTTTTCTAATTTCATGGCTAATCACTTTCGCAGTGCCTTCATATGTGTGGCATATAtgcttttaattgtttattacatGCAAGGTCAATGTTTTAGAGTGGTGACTGAAGTGCAAGAACTGTTTCAGACACGCAGATATTCACTTAGTTGCATTTCATTCATCAGTACATTActgcatatttatattgtataaatatataaaaaaaaacatatagtaCAAAGAAGGCTGCtgatgtcactttttttttttggttgcatttttaaaatttcgaATTCTTCTGGAGTTTGCAGTTCCATTTTATGCTTTATGGTACAGGATGCCGATATGTTAAATGCACGTCTCATCAGTTTAAGTTTGCTCTGTTTTGTGAGAATGAATTGTTCAACTGTTAAGGCCTGAATGTTGGATCCTAATGACACTCACTGAAGAAGAAAGATGCTGCTTCAGTTTGATATGCCTCACAGTCAGATTGCACAGATTATTTAAAGCAGTAGGGTTGTATGAAGAATGATTCCAAATTTATGACCAATATATACAAATGAACATTAATCTTTTACCCTGTGAGTCAACCTGCCAATGTAGACATTTGCTTGCATGATTGCGTGCTGCAATGCAgtgtattattaaatgcaaaatcttTGGCAACATCAACAAAAGGTATGCACTGCAATTAGTCCCTTTTAAACATTGGTAGATGTTTGTTTTGCTATGCTCACCAGTTATGGTTGGTTGCACTGTATTATTTGCAGATAAGATTGTTTTTTGCCCGATGTCCTTGAATGTTCAACCCATTTTTGGGGTTTGTGACTCAGTAAACCATTACCATTCACATTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211940 lncRNA upstream 1395 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 30403 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 288444 2487403 ~ 2543307 (+) True G143385
TU211725 lncRNA upstream 341551 2426489 ~ 2490200 (+) True G143349
TU211736 lncRNA upstream 427661 2402747 ~ 2404090 (+) True G143356
TU211960 lncRNA downstream 25523 2862772 ~ 2863017 (+) True G143491
TU211980 lncRNA downstream 93013 2930262 ~ 2937617 (+) True G143509
TU212075 lncRNA downstream 477928 3315177 ~ 3315473 (+) True G143578
XR_006247518.1 lncRNA downstream 499012 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 651262 3488511 ~ 3492565 (+) False G143590
XM_043221450.1 mRNA upstream 1395 2829114 ~ 2830356 (+) True gnrh2
XM_043221449.1 mRNA upstream 1395 2829114 ~ 2830356 (+) False gnrh2
XM_043221448.1 mRNA upstream 4842 2802146 ~ 2826909 (+) True ptpra
XM_043220866.1 mRNA upstream 31251 2793688 ~ 2800500 (+) False idh3b
XM_043220865.1 mRNA upstream 31884 2793688 ~ 2799867 (+) True idh3b
XM_043220871.1 mRNA downstream 5456 2842705 ~ 2845216 (+) True LOC122326157
XM_043220872.1 mRNA downstream 5456 2842705 ~ 2845216 (+) False LOC122326157
XM_043220873.1 mRNA downstream 5457 2842706 ~ 2845216 (+) False LOC122326157
XM_043222161.1 mRNA downstream 8531 2845780 ~ 2861350 (+) True fam169ab
XM_043222160.1 mRNA downstream 8964 2846213 ~ 2861350 (+) False fam169ab
TU211695 other upstream 594556 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1602706 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1675609 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1675609 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1776404 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 109603 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 478507 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 480986 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 777911 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 864180 3701429 ~ 3704397 (+) False G143650

Expression Profile