RNA id: XM_043221735.1


Basic Information

Item Value
RNA id XM_043221735.1
length 1500
RNA type mRNA
GC content 0.40
exon number 9
gene id stx2a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4102906 ~ 4106152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCACCTCAGTTTAGCAACGAATCATTCTGTCATGCTGTGCGTAGTGTAGCGGGTGAGAAATTAATTTGAAGTCGAAATGAAGGACCGTCTGGGCGATTTAACAGCCCTCTGCCATGACATTATCATCGCTCCAGTAGAGTCCAACGCTTTCCTAGAGGAATTCCTCCCCAAGGTTAATGAGGTTCAGCGACTTATACAGAGAATTTCCCTCTGTGTGGAAGAAGTAAAGCTGAGACATAGTACCATTTTGACAGAAATCAACCCACCAAATTATGTGAGAGAGGAACTTGAGCAGTTTAGCAGTGACATCAAGCACACAGCCGATGTAatcaaagctaaaataaaagATTTAGAAGGAAAATTCTCAGAGTATGAGAATGCTAACAGCAGCTCCGTGTACTTTCGCATCCAGACTACTCAGCACACAGTGCTTTCACTAAGGTTTGCAGAAATAATGAATATGTACAACGAAGAACTGCTATCTTTCCGGACAAAGAGTAAAGATCACATACAAAGACAGCTGGAAATCAgtgGCCAGGTTGTCACCGAAGAGGAGACTGAGGTTTTGCTGCAAAGTAACAACCCTGCTGTGTTTACCTCAAATATCAACTCCTGCATCACGACGAGGCAAGCACTGAATGAGATTGAGTTACGGCATATGGATATTCTCTCTCTGGAGGCCAGCATTCGAGAGCTGCATAGCATGTTTATGGATATAGCCATGTTAGTCAATAGCCAGAGTGAAATGGCAAACAACATAGCAAAGACCGTGATGCGAGCTGGAAACTATGTAGATCAAGGGAAAGAGAACATTGAAAAAGCTGTTGATTACAAGAAGTCCTGGAGGATAAGACTGCCTATATTCAAGAGCAAAGCAAAACCAGCTACTAGCAAGAGCTCTTGAATGAATCTTGAACTTTTGAATGTAAGCTGCTTGCGTTTGAGTTgaaaaagaaggatgaaagTGAAGGATTCATATTCCTTGCCTTTTCTTTAAAATCCCATTGTGTCACAGTATTTATTCAACACCCTGTATATCTTTTTGCTGGTCAGATCATTTGTAGCTATCTTTGGGATTTGCCCATTTGCAAACAAACggcttttatttgtttctgcTTAGATGGTTAATGATTAAGCTTGCTCTCAGATACATAGACAACACTAGCAGAATTTTTCTGACGCAATATGACTACGATCACGTGAGTGTCAACAGGTGTGTTTAGATGGACTAATGTTGCTCATAGGGAATATTCACGCTATATACATTCAATACATgcttaatttattcctgttcaGGTCTACACCTCCTCTTTCCCCTCTTTCCATCAAAGACTGATTAAGGTGTTCACATACACGCTTTTCAGTCAAACTGTACCTTCTTTTTTCAATTCAATGGCAGTTGGGAAACAgacattttgtgcatttcaaCTAATGCATCTGCATTCAGAATAAGACTTTCTGACctggtttaaaaatgaaataaataagtctAGTTACA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212299 lncRNA upstream 16380 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 181187 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 181627 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 299137 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 333350 3763332 ~ 3769556 (+) True LOC122326834
TU212327 lncRNA downstream 649 4106801 ~ 4108678 (+) True G143725
TU212347 lncRNA downstream 405774 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 445269 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 457182 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 482574 4588726 ~ 4589152 (+) True G143751
XM_043221682.1 mRNA upstream 28487 3947066 ~ 4074419 (+) True vav2
XM_043221683.1 mRNA upstream 28487 3947066 ~ 4074419 (+) False vav2
XM_043221685.1 mRNA upstream 28487 3947066 ~ 4074419 (+) False vav2
XM_043221684.1 mRNA upstream 28487 3947066 ~ 4074419 (+) False vav2
XM_043221688.1 mRNA upstream 28487 3947067 ~ 4074419 (+) False vav2
XM_043221736.1 mRNA downstream 635 4106787 ~ 4206681 (+) True LOC122326660
XM_043221737.1 mRNA downstream 101509 4207661 ~ 4228492 (+) True rimbp2a
XM_043221520.1 mRNA downstream 177044 4283196 ~ 4286425 (+) True LOC122326554
XM_043221521.1 mRNA downstream 181051 4287203 ~ 4331354 (+) True LOC122326555
XM_043221519.1 mRNA downstream 232820 4338972 ~ 4359303 (+) True LOC122326553
TU212191 other upstream 398509 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 398509 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 398509 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 487675 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 783027 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 649 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 26284 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 103108 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 474899 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 475766 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile