RNA id: XM_043221736.1


Basic Information

Item Value
RNA id XM_043221736.1
length 919
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC122326660
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4106787 ~ 4206681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGGGAGCTGTAGGAGGGGAAGATTTAGACACACATACTCTCTGTCTTTGCTGTTTGTGTTACAAAAAGCAGGTCTATACTGCATCTTTCAGCAAAGATACACACTTTGGAGAAAAGGCagtttctctctccctctgtttagttttgctctctttctcacatTCGCAGCTTGTTATACCTTGGAGAAAATGTCATGGTCTTACTTGCACTCAATCTTTCTGTTAACTTGCCAGAATGTAACAGATGTAACAGAACATACAGTTTTCCTTAACATTAAGTTGGGCTGCTGTCAACAGGGCCGCAGTACGAGACGAAAAGAAGACAAGAAGACATCAAATAAAAAGGAGATGCGAGGTCAAAGAATTGACGTAGAGCAGCTTCTCAGGCAGTCACAGACTGAACTGCTGTGGATCCAGCGACAGCTGTCAATCATAGCAGCAGGAGATGCCAATCGTGCACGGGCCCAAAAGAAGCTGAAGCAGGAGGCCCAGCCGTTGCACCTGGCCTCTCACGCAGCCCACCATGTGAACCGCTGCCACCTCTTAGAGGAAAAGAACAGAGCTCTTAAACTTGAGCTAGCCACTCTCAGACAGCATAAACAGCAGCACAGATCTCTGGAGTCAGAGGTCAACGAGCGGAGGAAGAGGTGTCAGATCCTTGAGAGAGAAGTGAAGAATAAGGCATTAGAATGTAAGACTTTGAAGAATGAGCTTCAGGATGCTTTGCTGGAGAGAAAACGGCTCAATCGTGAGCTGCTTAGTCACATCCTGAAGGCCACACAGTACGAGAAGCCGGCGTGCCACGGTTTGGCAGTCTCTTTCCGAATAATCCACAGGCTGCTCCCCTCCTCTAACAGCAAAAAGGGCCATCTGTCACAACCCCAGACAAGCGTCTGAGATAAAATGTCTTCTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212299 lncRNA upstream 20261 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 185068 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 185508 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 303018 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 337231 3763332 ~ 3769556 (+) True LOC122326834
TU212347 lncRNA downstream 305245 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 344740 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 356653 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 382045 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 544536 4751217 ~ 4751510 (+) True G143826
XM_043221735.1 mRNA upstream 635 4102906 ~ 4106152 (+) True stx2a
XM_043221686.1 mRNA upstream 32368 3947067 ~ 4074419 (+) False vav2
XM_043221737.1 mRNA downstream 980 4207661 ~ 4228492 (+) True rimbp2a
XM_043221520.1 mRNA downstream 76515 4283196 ~ 4286425 (+) True LOC122326554
XM_043221521.1 mRNA downstream 80522 4287203 ~ 4331354 (+) True LOC122326555
XM_043221519.1 mRNA downstream 132291 4338972 ~ 4359303 (+) True LOC122326553
XM_043221210.1 mRNA downstream 303689 4510370 ~ 4520829 (+) True smpd4
TU212191 other upstream 402390 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 402390 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 402390 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 491556 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 786908 3318235 ~ 3319879 (+) False LOC122326950
TU212324 other downstream 2579 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 374370 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 375237 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 376418 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 498520 4705201 ~ 4709441 (+) True btc

Expression Profile