RNA id: XM_043221808.1


Basic Information

Item Value
RNA id XM_043221808.1
length 4824
RNA type mRNA
GC content 0.44
exon number 13
gene id cadm1a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 7630051 ~ 7863912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCGTTGCTCTAGGTGAAGCTCAACTCACTCACGAGCTTCAGAATGAAGCAGGTGTCCAACATGGCGAACACGAGCAACGGATCTCTCGCTACTCTCCTCATTTTATTCACCATTTCGGCAGCTATCTATACAGGAGCTGCTCAGTTCCCAGTCCAAAGCCAGAATCTCATATCGGACAACGTCTCAGTAGTTGAGGGAGAGACAGCCACCATAAGCTGTCGAGTCAAAAACAATGACGACTCTGTCATCCAGCTTCTCAACCCCAACAGACAGACCATCTACTTCAAAGACGTCAGACCCCTGAAAGATGCTCGATTCCAGCTGGTCAATTTCTCAGACAACGAGCTGCGTGTGTCGTTATCCAACGTGTCTCTCTCAGACGAGGGAAGATACGTGTGCCAGCTCTATACAGACCCCCCACAGGAAGCCTACGCCGACATCACTGTGCTAATCCCACCAGGAAACCCAATCATAGAGTCCCGCGAGGACATCGTGAGGGAGGGCAACGAGACAGAGATAACCTGCACCTCCATGGGCAGCAAACCCGCCGCAACCATCAGATGGATGAAAGGAGACAAAGAGCTACAGGGCAAATCTAAAGTGGAGGCCACGTATGACAGGATGTTCACTGTGACTAGCTGGCTGAGGTTTACCGTCACAAGAGAGGATGATGGAGTTCCTGTGGTTTGCATTGTCGACCATCCAGCGGTCAAGGACTTTCAGGCGCAGAAGTACCTTGAAGTACAATATAAACCTGAGGTGACGATCAAGGTGGAGTTTCCGCAGGGCCTGATTAGAGAGGGCGAGAATCTGGAACTGACGTGCCAGGCTAAAGGCAAACCACAGCCTCAGCAGGTGAATTGGGTGAGGGTGGATGACGACGTGCCGCCACACGCGGTCATCACCGGCTCAGATCTCTTCATTGAGAACCTCAACAAGTCCTACAACGGCACTTACCGGTGTATGGCGTCCAACTCTGTGGGTGAAACGTACGCTGACTACATTCTATATGTGCGCGATGCCCTTACCACAACCCCTAAACCCacaaccaccaccaccaccatctcCGCCACAACCTCCCCTCCAGACATCATACAAGACGCTGCGCCCAGCACTGAAGCCGCAGCTCACGATTCACAAGCAGGACCAGAAGCACAGAGATTGGACCATGCGGTTATCGGAGGAGTGGTGGCCGTCGTGGTCTTCGCCATGTTGTGTCTTCTCATCGTTTTGGGACGATACTTTGCAAGACACAAAGGCACCTATTTCACACACGAAGCCAAGGGGGCGGACGACGCGGCGGACGCCGACACGGCCATCATCAATGCCGAAGGGGGCCACAACAACTCGGACGAGAAGAAGGAGTACTATATCTGAGTCCCGAGGCCTCTGTTGTTCTTactattttctttttggttttgtttttggggtgggggtggggCATGGGGAAACTGAGACCGTTttagttggtttgtttgttggtttcGTTTTCTTTCCTGGGGATCGAATGACGTAGAATGCTACACGGGCAGCTGAGAAGATGTAGGTATTTGTGTTATACAGGGTCAGGGGTGGGCTTTCGGGGCGGGCGGGATACCAGACGTTGCCAGATATGAGTGTAGAAAGCGTCACCACACAGCACCTCCCCAACTGCTGGTATTTTTCGTTCATTTCTCGACCATTTGCAGAAAATTCTGTGCCTTGTTCTGAATTTCTTTTCTTAGTCACGCTTTAAACGCCTCCATCACGTCACACCTTAAACCCCCTTCCCTGGAAACGCACATACACCACCATCTCCGATTATCGACTTTATCAGCTTTCCTATGAAGCGCACACCTCAATGCATTCCCCTACACTGTGGGCATCTCTTTCAAAACATCATATCCTCTGTACTAAAAGCAGGCCTAGTCACATAACAGCGTTTTGATTTCCTCAGTCCCCAGTCATCAGCATCATGAAGAGAAGTGCAAGCagcttccttccttccttcctgtcCCCTAACAAGTTGATGAGACCGGCGGAGAATTGATCCTGAAAGTTGCACCTGTTTTCATTATGACAGGCCGCGTCTGCATCGCTGCAGAATGCTTTTATCTTCGGTTTACTTCATTTACTTGACTTTCTTTCAGCTATACTGTATGTTCCAGTACATCTGAAGCATCACAACCGCTCAGAATGAGCATATGTGCATACGAAAGCTGCACCTACGGAGGCTTATTGTCTCGTTCTGCTCAGCTAGACACAGCCGAAAGCCCTTGCAGCTATTTATTGTTTAGTTATAATGATGTGTTAGGTTTTCTCGGCATTTCCATCCAGACACGTTTTTACACATGCCATAATGACGAAAGAGTCGCCGTCACTGAAAAAGGTCTAAATGCTGTGGCTTAcgtttcgtttatttattttttttcccgtcTTTCGCTGTAGTTTCCCATGCAGGGCTGGTGAAGGTGACCCTCTAGCACACGTAAATAACTACCTAAAATTGTGTCAAAGCGTTTCGTTAGGCTCAAGGGAGGAAGCACCACAACCGTCATGTTTATAGATGTACAGAGAGGGCAGATTTGGAAATGATTTGATTGCTATAACTTTACTaccttaaaatgcattttaacagccaaaaaacatctgcatttgTGTATCTCGTTTGTAGGCGAGTCAGTGAGGATGTGACATTGATGTTAAGCAGTCCAACAAGTGTGTAATGGTATATGATTGCCTGTCAAGTTAATTGCCTGTTTGTTCTTCCTCAGAGGAAACAGTGGCAATCGCAGCTAGCTTATCCTAGTGATATTAGTATTTGAATATAAACTGCCCAAATATCCAAGACTCCATGGTGCGAAATTCACCACGGCGACATAATTTCCTCTTGAAGTGTAaacaatgtgtgttttattgtttataattgCTGTGAGTTGCTCCTCCGGGTTCCTGCTTATGCATAATAGTCCTGGGCTTCAAATGAGGTTGGTTTGAATGGAGAGTGAAATAGTCTTTTATTACCAATacagtttgagaaaaaaaaaaaaaaagtggaaaaagcttttaataacattccaaatattttagaaaagccGTCTACAATGTAATTAGCCGCATTTGTGGATTTTCCCCTATATTGTCAACACATGACGCTAACCAAAAAAACTCTGCCGACACGCTCAAGTATCATGCTCTCACATTAGACATTTCACCGAAGCCTAGCTACAAACGTCGCGCCCGTTAAGGGCACATAATGTAAGGTGGCTAAGATGTCTAAAGTACTTTTCCTGAAGAGAAGTATGTCTTCTCATTTCCTCATGACTCTCTCTGTAGTGTAAGTGAACTTAGACGCCATAGTTTAGGCCCTGCTGAAATCAACCTCAGTGTGTAAATAAAACGGCGAGGTTGAGGGGGGGGGAGAACGCACTCTcgtttgctttattttcttatttaaaaacgaaaaaaaaacacgagACGTTTTAGAGTATGTGCATTAACCATGAGAAACACTTTTGGACGCGTTTGTTTTTACGTAGAATACAAATCCGAGGGAATGTCTTGCAGCTTGATGGTTACCGTTGCAGTTGAGATATACAGTTGTGTGGCTTGTGCTTAACTAGTGAGCATCATTTAGCTTTGGTCTGGCAGCTTCTGAACAGGATTTCAGACATCCCTTCTTCTCTTTTGCATATGTGAGAGACATGACATCAGTATACTAATTTGTGGTATTTAGACTGGGCCGATGTACATTTTGTTCAACTTGTTACGTTAGACCtgttttaatgtgattaatgtGGTTCAATCCACTCTACTAGGCGTCTGAGGACTTAAGACAGACGGTCGATGGGAAGACGCGGTTACGCCAGTGATCTATTTTGTCGTCTGTCTCTTGTACAGCAGGTCGAATTGAAAGTGTCCAAATATAACTTGCTTGTTTTGAGATGTGAACTGGGTTCGGTTTCAATTCTGTCATTTCTGTCGtcgtgtttgttgtttttgttgctttacTAGTGCCCCTTGTTTGATAGTGCAACAGTGTTACTGATGGAacttgatttgatttcttttatttgaacttGACAGTTTCATTTAAGCCCTGTCTCAGGTTCACGTACAACGCACGGTATGTTTGCATCTCAGGTAGAATGCAAAGTTAAAGCCCCCCGATTGAGCAAGTGGAAATTAAATACAAACCGGATCAAGCCGGATCTCAAATCAAATGGTGAATTTTTACATTAGAACTacgttttgtgtattttttgttgatgttgtttATTTGGTGCACTGTAAAATGTGTACGTAACGTACACGCTATGTTGAGtattatctcttttttttgacCTACTTCACACAGAGAGGACAGGAAAGGACAAACCAACTGCTCTCATGATAAAACGTAATTATTTTACACGTTTTAAAAGAAGGTAAACAAAAGTACGAAGTATGAAGGACCACCTGTAAATCTAATCATCAGCAGTGGGGCGTAAGCAGATCGGATGATACCAGATTATACCAGCTCACCCCCAATTTGGCGAAGCGTAAAATAGTTATTCATTTCCATGAGAGTGTGTTGGGGCAAACCAATTTGAATTCAAAGTCGACATGTTTCTCGTTCTGGTTCCAGATAGTTTGGAAAGTTTTGAACGTTTATCATTCATTGTTTTTGGGttggttatttttttgtctttctgctGTACTTGGGCAATGTTACTGTgtattaatgaagaaaaaatgatATCCACATTCCCAtacacattttgtatttgttcatattagacatttttacaaaaaatggaGAGTTCTTGtcttaataaaaaagaaaagatattaaTGTTCAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06781 CADM1, IGSF4, NECL2, TSLC1; cell adhesion molecule 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213332 lncRNA upstream 538601 6702902 ~ 7091450 (+) False G144371
TU213327 lncRNA upstream 544128 6696709 ~ 7085923 (+) True G144370
TU213372 lncRNA upstream 562057 7060072 ~ 7067994 (+) True LOC122326110
XR_006247426.1 lncRNA upstream 563110 7059929 ~ 7066941 (+) False LOC122326110
TU213315 lncRNA upstream 583259 7045061 ~ 7046792 (+) True G144363
TU213628 lncRNA downstream 123708 7987620 ~ 8048741 (+) True G144587
TU213639 lncRNA downstream 285483 8149395 ~ 8149616 (+) True G144598
XR_006247507.1 lncRNA downstream 343909 8207821 ~ 8208941 (+) False LOC122326775
TU213688 lncRNA downstream 355224 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 366341 8230253 ~ 8249704 (+) True G144652
XM_043220786.1 mRNA upstream 447209 7104872 ~ 7182842 (+) True LOC122326095
XM_043220793.1 mRNA upstream 578953 7047937 ~ 7051098 (+) True LOC122326105
XM_043220791.1 mRNA upstream 705416 6916156 ~ 6924635 (+) True LOC122326102
XM_043220788.1 mRNA upstream 714369 6909558 ~ 6915682 (+) True LOC122326099
XM_043221901.1 mRNA upstream 902836 6722166 ~ 6727215 (+) True htr3a
XM_043221984.1 mRNA downstream 44100 7908012 ~ 7908954 (+) False anapc13
XM_043221983.1 mRNA downstream 44102 7908014 ~ 7908954 (+) False anapc13
XM_043221892.1 mRNA downstream 256160 8120072 ~ 8148977 (+) True jam3b
XM_043222116.1 mRNA downstream 287191 8151103 ~ 8158831 (+) True zgc:171740
XM_043222117.1 mRNA downstream 287191 8151103 ~ 8158831 (+) False zgc:171740
TU213247 other upstream 1094257 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 1704524 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 1705690 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 1706556 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 1780998 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 43552 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 44143 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 44143 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 44143 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 343891 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile