RNA id: XM_043221810.1


Basic Information

Item Value
RNA id XM_043221810.1
length 1765
RNA type mRNA
GC content 0.50
exon number 3
gene id nkx6.1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4585890 ~ 4588458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAGCTTCATCGTTCAGTGATTGTTCCGCGATTTATCTGCGGAGTGTTTAAGCCCTGTCCACAGAGACTTTTAAGCTCGTAAGATATCCCACTGCCTCACATGACCGGCACGCATGCAGATGTCCCTTTATTTAAGAAATAGATCTCAAATTGACTAGATTGATTTTGTCtcctttttgtatttaatagcTGGTCGGATGGCAGCTCTTTTAATGTGCAAATGAGAACCAATGAGGACAGACTCCTAAATTCAGTTCAGACACTCATCTGACACGGGCCACGTCACCGCCGGCCTCAGCCAATCGCGTCGCGCCGAGCCCCTCCACTTTCCCAGGCACGCTCTCAAAGTTTTGACTTTTTGCAGCAAAAGACGGCAGgttgatgaaaatgttttattatcttcCAGATCTTCATGTGAACTACCCAGAAAgactctctttttatttatagatttcaAAAACGCTCTCGTTGAAAGGACGCCGCTCTGTCGTATCATGCAAGAACTGAAAGAAGGGAATGGATTTTGCCAGAGGAGATGGGTATGAAGCTTCGGTGCAACTGATTGGGATTTTTTAGagaaaataacctttttttctaaaggcttgagtgtttttgtttggtttttccccctccttcctctctctctctctcttattcacTGTTTCGCGTTTGTTTTTACGTTTGGCGCTGGTCTCCATCGTCTTGCTTCTTGCGCAATATTTAGTTGAAGTTGAAGTTTCTTGGTAATGTTAGCTGTGGGGCAAATGGACGGGTCTCGCCAGAGCGCTTTCCTACTCAATACCCCACCTCTGGCTGCTTTACACAGCATGACCGAAATGAAGACACCACTTTACCCAGCATACCCGTTATCTTCCACCGGACCAGCATCCTCCACTTCGCCGACAGCTACCTCTCCGAATCCAGGCGGTATCCCGGTCTCGTCCCCGGGGATCAAAACATCCACCGGACTCTCGGTCCTCGGATCGCCCCAGTGCTCGATCGCCACACCTCACGGAATAAACGACATCCTCAGTCGACCCGCGGTGGTCACCGGAGCGGCGGCGGCGTCTTCTCCCGCTGGAATCTTGTCAGGACTGCCCCGCTTCAGCAGCCTGAGTCCTCCGCCGCCTCCAGGGCTGTATTTCAGCCCCAGCGCCGCGGCCGTGGCGGTGGCTCGTTATCCGAAACCCCTGACGGACCTTCCAGGCAGAACCCCTATATTCTGGCCTGGAGTTATGCAAAGCCCGCACTGGAGAGACGCCAGATTTGCTTGTTCCCCACATCAAAACTCGGTGCTCCTGGACAAGGATGGGAAAAGGAAACACACGCGACCAACGTTTTCCGGGCAGCAAATTTTTGCCCTGGAAAAAACATTTGAGCAAACGAAATATTTAGCTGGACCCGAGAGAGCGCGGCTGGCCTACTCTTTAGGAATGACAGAGAGCCAGGTCAAGGTGTGGTTTCAAAACCGAAGAACAAAATGGAGAAAACGGCACGCGGCCGAAATGGCCTCGGCGAAGAAGAAACAAGATTCGGAGACCGAGAGGCTGAAAGGGGCTTCGGAAAACgaagacgacgacgacgacTACAACAAACCCCTGGACCCAAACTCGGACGATGAGAAAATAACGCAGctgctgaaaaaacacaaaccgaACTCGGCTCTTATCATTCACACGTCGGAAAACGAGAGCTCGTAAAACGGAAACGGCGAACGGTCCGTCCGGTTCTTCGAGAAGTGTCAAAATATAATGTAGGCTGCTG

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045165 cell fate commitment biological_process
GO:0003309 type B pancreatic cell differentiation biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K08030 NKX6-1; homeobox protein Nkx-6.1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247494.1 lncRNA upstream 7762 4563334 ~ 4578128 (+) True LOC122326582
TU212360 lncRNA upstream 33422 4551421 ~ 4552468 (+) True G143745
TU212347 lncRNA upstream 61710 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 477212 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 499364 4075527 ~ 4086526 (+) True G143717
TU212368 lncRNA downstream 268 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 162759 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 163449 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 211644 4800102 ~ 4862403 (+) True G143872
TU212577 lncRNA downstream 302680 4891138 ~ 4893087 (+) True G143887
XM_043221560.1 mRNA upstream 2588 4580634 ~ 4583302 (+) True rpl17
XM_043222093.1 mRNA upstream 28264 4554358 ~ 4557626 (+) True nefla
XM_043221386.1 mRNA upstream 41258 4538262 ~ 4544632 (+) True crkl
XM_043221211.1 mRNA upstream 61854 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221210.1 mRNA upstream 65061 4510370 ~ 4520829 (+) True smpd4
XM_043221551.1 mRNA downstream 98458 4686916 ~ 4690339 (+) True abraxas1
XM_043221441.1 mRNA downstream 103734 4692192 ~ 4698582 (+) True helq
XM_043221442.1 mRNA downstream 110268 4698726 ~ 4704776 (+) True hpse
XM_043221443.1 mRNA downstream 116699 4705157 ~ 4709034 (+) False btc
XM_043220714.1 mRNA downstream 132298 4720756 ~ 4729360 (+) True amacr
XR_006247545.1 other upstream 2733 4583099 ~ 4583157 (+) True LOC122327011
XR_006247542.1 other upstream 3900 4581918 ~ 4581990 (+) True LOC122327008
XR_006247544.1 other upstream 4764 4581051 ~ 4581126 (+) True LOC122327010
TU212330 other upstream 199678 4132436 ~ 4386212 (+) True G143726
TU212324 other upstream 372118 4209260 ~ 4213772 (+) False G143725
TU212480 other downstream 116743 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 142145 4730603 ~ 4730881 (+) False slc45a2
XR_006247451.1 other downstream 311032 4899490 ~ 4910505 (+) False fybb
XR_006247485.1 other downstream 359126 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other downstream 359126 4947584 ~ 5025628 (+) False tnksa

Expression Profile