Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043221811.1 |
| length | 1478 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | nkx6.1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056719.1 |
| NCBI id | CM032088.1 |
| chromosome length | 19199999 |
| location | 4585890 ~ 4588458 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0021522 | spinal cord motor neuron differentiation | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0003309 | type B pancreatic cell differentiation | biological_process |
| GO:0003310 | pancreatic A cell differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006247494.1 | lncRNA | upstream | 7762 | 4563334 ~ 4578128 (+) | True | LOC122326582 |
| TU212360 | lncRNA | upstream | 33422 | 4551421 ~ 4552468 (+) | True | G143745 |
| TU212347 | lncRNA | upstream | 61710 | 4511926 ~ 4524180 (+) | False | si:ch211-222n4.2 |
| TU212327 | lncRNA | upstream | 477212 | 4106801 ~ 4108678 (+) | True | G143725 |
| TU212299 | lncRNA | upstream | 499364 | 4075527 ~ 4086526 (+) | True | G143717 |
| TU212368 | lncRNA | downstream | 268 | 4588726 ~ 4589152 (+) | True | G143751 |
| TU212488 | lncRNA | downstream | 162759 | 4751217 ~ 4751510 (+) | True | G143826 |
| TU212489 | lncRNA | downstream | 163449 | 4751907 ~ 4752259 (+) | True | G143827 |
| TU212559 | lncRNA | downstream | 211644 | 4800102 ~ 4862403 (+) | True | G143872 |
| TU212577 | lncRNA | downstream | 302680 | 4891138 ~ 4893087 (+) | True | G143887 |
| XM_043221560.1 | mRNA | upstream | 2588 | 4580634 ~ 4583302 (+) | True | rpl17 |
| XM_043222093.1 | mRNA | upstream | 28264 | 4554358 ~ 4557626 (+) | True | nefla |
| XM_043221386.1 | mRNA | upstream | 41258 | 4538262 ~ 4544632 (+) | True | crkl |
| XM_043221211.1 | mRNA | upstream | 61854 | 4520965 ~ 4524036 (+) | True | si:ch211-222n4.2 |
| XM_043221210.1 | mRNA | upstream | 65061 | 4510370 ~ 4520829 (+) | True | smpd4 |
| XM_043221551.1 | mRNA | downstream | 98458 | 4686916 ~ 4690339 (+) | True | abraxas1 |
| XM_043221441.1 | mRNA | downstream | 103734 | 4692192 ~ 4698582 (+) | True | helq |
| XM_043221442.1 | mRNA | downstream | 110268 | 4698726 ~ 4704776 (+) | True | hpse |
| XM_043221443.1 | mRNA | downstream | 116699 | 4705157 ~ 4709034 (+) | False | btc |
| XM_043220714.1 | mRNA | downstream | 132298 | 4720756 ~ 4729360 (+) | True | amacr |
| XR_006247545.1 | other | upstream | 2733 | 4583099 ~ 4583157 (+) | True | LOC122327011 |
| XR_006247542.1 | other | upstream | 3900 | 4581918 ~ 4581990 (+) | True | LOC122327008 |
| XR_006247544.1 | other | upstream | 4764 | 4581051 ~ 4581126 (+) | True | LOC122327010 |
| TU212330 | other | upstream | 199678 | 4132436 ~ 4386212 (+) | True | G143726 |
| TU212480 | other | downstream | 116743 | 4705201 ~ 4709441 (+) | True | btc |
| TU212485 | other | downstream | 142145 | 4730603 ~ 4730881 (+) | False | slc45a2 |
| XR_006247451.1 | other | downstream | 311032 | 4899490 ~ 4910505 (+) | False | fybb |
| XR_006247485.1 | other | downstream | 359126 | 4947584 ~ 5025628 (+) | False | tnksa |
| XR_006247486.1 | other | downstream | 359126 | 4947584 ~ 5025628 (+) | False | tnksa |
