RNA id: XM_043221921.1


Basic Information

Item Value
RNA id XM_043221921.1
length 5785
RNA type mRNA
GC content 0.45
exon number 9
gene id znf532
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 762646 ~ 779143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACACTGCCCCCTTCCTCCCTGTGCCGCCGTGTGCATCTGCAGAGGAGAGAGTGACCTATAGAACGCGAACCAGCAGGCTCATagtgaagggaaaaaaaatcacactcaTACAGAATGGGGCCTGGCTGGACTGACGTCTTGCATAAGCCTTTCCATGAAGATTCCCGGTAGTAGGGCCGAGGCGAAGCGGGgtgtttagctcatTCTCATAAGACCATGGGCGACATGAAAACCCCAGACTTTGATGATCTGCTTGCGGCCTTTGACATTCCTGATATGGTTGATCCCAAGGCTGCCATTGAGTCCGGCCATGACGATCATGAGGGACAACTCAAACACAATGCCCACCATGAAGAGGACTCCCACGTCTCCTCGGGTCCAGATGTTGGGGTTAGTGTTATTGTTAAGAACGTCCGGAATTTTGATGCCACTGAACATCTCTCAGAGAAAGATGTTCATCCCACTGTTGGAAATGGACTGCACAATGGTTTCTTGCCCGTATCACCCAACAACAGATACAGCAAAGAGAGTGACAAGCTTCAAAAAGGCGAAATCCATGGGATGGCAGGAAATATCTCCACATTTAACCAGTTCAGTCCAATCTCTAGTGCCGAAGAatttgatgatgatgacaaaATTGAAGTAGATGACCCTGTCGACAAACAAGGTAATTTACAGTTTAGACCAAACCCTCTAACCAGTCTAAGTTCAAAGACTGAAGAACCTCGTTCTCAGCACACCAAACCAGATGGTCCAACTAGGCCAAGAACAAATGGCAAtcataatcatttaaaagttgATAATAGTAGCGCAAATGGCACAGTGGGACACTCAAACATATATGAATCTCAAAAACCAAGAAAGACTGAGGAACACTTCAAAGAAAGAGCCCAAGAAGCAAAAGAGCTTGGAGGACCAGTTGTTGAGTTGAATGTGACCAACCTCTCCCAAGCCAAGGCAAAATCATCTGCAAAGCTCTCATCCTGCATTGCTGCAATTGCAGCACTTAGTGCAAAGAAAGCTAGTACAGAAGCAATATCTCCAGAATCCCAAGCCACACCTCGCGATTCACCCAGAGAGGCTAAAGAGATCCCAAAGGTTACGGATAAATCACCAGAGCAGGAGTCTGCTCTGGAGCTTGGCAAGAAAATGCTCTCAAAACAACCTGAGAGTCCTTGCAGTGTTACCAGTGAAAGCAGCAGCAAAGAGTCTCCTGCATCTCCAGCAGGATCTATACCAGTCATTCCCAAAGTCCGCATCAAAACGATCAAGACTTCTTCAGGACAGATCAAGAGAACTGTTACCAGAGTCCTGCCCGAGTTTGATCCTGAAGTCTTGAAGAAAGGTGTTGACACACCTCTACTGTCCTCTTCAACCTCGTCTTCTGTTTTCTCATCTCCTACAAGAACTTTGCCGACCACAGTAGTAGCAACTTCTGGAGGCTCTGCCATTGAAGTAACTAAGCAAATGACCATCAAGCCCGTGGCCACCGCCTTCCTGCCTGTCTCAGCTGTTAAGACAGCAGGCTCACAAGTGATTAACCTGAAACTTGCTAACAATACGACTGTAAAGGCCACCGTCATACCAGCGGCATCTGTTCAGAGTGCCAGCAGTGCCATCCTTAAAGCTGCTAATGCCATTCAGCAACAAACTGTCATGGTGCCTGCTTCCAGCCTAACAAACACCAAACTTGTGCCAAAGACTGTCCACCTAACCAACTTAAATCTCTTGCCTCAGAATGCATCAGCAGCTGAGCTCCACCAAGTCCTGACCAAGCCCCAACAACCCATCAAGCAAGCTTTATTGGGCCAACAACAGAAGAAAGTGTCTAGGGTCCAGGTCCTAACCAGCTCTCAGAGCTCAGTTGTAGAAGCTTTCAATAAAGTTTTGAGTAGCATTAACCCTGTGCCAGTTTATGTACCCAATCTCAGTCCTCCGGTTTCTGCCTGTATATCTTTACCATCCCGTGGGTACAAATGCTTGGAATGTGGTGATTCCTTTGCACTCGAAAAAAGCCTCACTCAGCATTATGACCGTAGAAGTGTCCGCATTGAGGTCACTTGCAACCATTGTGGCAAAAACCTAGTTTTCTACAACAAGTGCAGCCTACTATCACATGCTAGGGGACACAAAGACAAAGGGGTTGTCATGCAGTGTTCTCATCTCATCTTGAAGCCAATTCCAGCGGACCAGATGATCCTTGCACCATCAGTAACCTCCAGCCCTCCCACCTCTACAGCTAACCTTGGATCCTCTGTAGTGGGAAGTCCAGGGAAAGGAAACCCAACCACGGTTATCTCTGCACCCTCTTCGGCTCCTGTCGTGGCTGCCATGCCTCTAGATAAGGATGTCTCCAAGGTCTGCAGATCAAATCTGAAGTGCTTGGAATGTAATGAGACATTTCAGGAAGAGTCATCACTTGCAATGCATTACCAGCAGGCTCCTGAATCCGGTGGACAGaaaacctGCACCATTTGCCAAATGCTACTGCCAAACCAGTGTAGCTTTGCTTCTCATCAGCGGATCCATCAGCATAAGTCTCCATATATCTGCCCTGAATGTGGAGCTATCTGTCGATCTGTCCATTTTCAATCTCATGTGACCAAGAACTGCCTGCACTACACACGTCGAGTGGGCTACCGCTGTGTTCACTGTAGTGTCATCTTCGCTGATGTTGCTGCTCTCAAGTCACACATTCAGGGATCGCACTGTGAAATCTTCTACAAATGCCCCATCTGCCCCATGGCTTTTAAATCGGCCCCCGGTACACATTCCCATGCCTACACTCAGCATCCAGGGGTTAAAATTGGAGAACCTAAGCTGATCTACAAGTGCTCCATGTGTGACACCGTATTTACCCAGCAGACTTTGCTCTACACGCACTTTGACCAGCACATATCCAGTCAGAAAGTGTCTGTCTTCAAGTGTCCGGACTGTTCGATGCACTACGCCCAAAAGCAGCTCATGCTGGATCATATTAAATCCATGCATGGCATCTTAAAGACCATCGAAGGCCCTCCAAACCTGGGCATCAATCTCCCTCTCAGCTCCAAACCTACTAATTCGATGAGCCcgaataacaacaacaaagaggGCATCTCTATCAGTAGCCTCGAGAAAGGAGAGAGGAAGCCAACATCACCAACAAAAAAGAATAGTAATGGAACAGACCTTCCCAAAAAAGCCCCATTGTCCATATCCTGCCCTGGCTGGACCTGCAGGGAGTGCAACCGGTTGTTTACACAGAGAGAAGTCTTCATCGCTCACATGAAAAGAGAGCATGGGAAGCAACTGAAAAAGCATCCATGTCGACAGTGTGAAAAGTCCTTCAGTTCCTCTCACAGTTTATGTAGACACAACCGAATCAAACACAAGGGCCTACGGAAAGTCTACTCATGTCCACACTGCCCGGAACCCAGTCGCACTTTCACCAAAAGACTGCTGctagaaaaacacattcagctGATGCATGGCATCAAAGACGCAGAGGCCAAGCTTCCGGTAGATTCCAGCAGTGCAGAAGCCACCCCGGACAAAGAGCAGGTCCCCAGTCCTAAGCGAAAGCTTTattctgaagatgaagatgCTGAAAGGGAAGAGGAAGCGCAGGAGCCCGGAAGAGAGGCGACTTCTACTCAGCGGTCCAAGAGCTCATCCTCACAGCCTCTAAAGAAGCTCAAGATTAACGTCTTCAAGACACACAAATGCGCAGTGTGTAGCTTCACCACTGAGGACATCGTGCGTTTCCACGAGCACATTCCCCAGCACAAGACCGATGTCTCGTCCTACCAGTGTCGCGAATGCGGCCTGTGCTACACCTCGCACAACTCCCTCGCTCGACACCTGTTCATCGTGCACAAGCTGAAGGAGCCCCAAGGACTCGGGCGACGCAACGAGCAACAAGAAAACACGCCCAACCCGGACGCCAACGACGGTATCCCAGATACTCAATGTAAAGtatgttcaaaaacatttgaaacggAGGGagccttaaacacacacatgcggACACACGGAATGGCCTTCATTAAGTCCAAACGGCTGAGCGCAGCTGAGAAGTAAGAGCGAGGTTGTGCCCCCTGGTGGACGGATGTTGCTTTGCAAGgaattatttgtttgtatgttgtACTTATAAAAGCGTTTGACGTCATACTCCTTCACTCTGGCCTCTTTGTATGCTCATTTagtgtgcatacatatacacatatatatatatatatatatataaatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatgtataaatctatACACACAGGATGTGTGTTTAAAGatgtgtaatatattaaaaactgatttatgtgtatttaattatatatgagAACACATTTTGTATACTTTATGATAGATGTTTGTATGCGTGTTGGATAGACCTTTTTTAtagattctttttattttctattttagatGGTTCTCGTTGTTTTCTCGTGGGAGCAGATGGCTGTCTCAGTCTTGGGATACTTTCGGTCCCAGTTACTGAACTgctgctagaaaaaaaaaaatgtacagaaagtGCACAGAATGTCACCGTTACACTTCTCAGTGAGACATTTTGCACTCAAAAAGGACAATCAGTCCGCAAACCTACAACACGAGCAGGAAAAGCGTCTCCTAAGGCAGCCGAAAATGGCGTTCGACTGAAGATTTGGTTGCTGAATTCAGCCTGAAAGCTTTTTATGGtgcatttctgttttgtgaATTAGTCGTCCGTTTAAAACTACTATAATTTAGCACTGCGGAAGAACAAAACATGAAAGTAGGTCTTTATATATCTCAGCCACTGCCAAGAGGTCGTGTTGAATCGATATGTGCTTTTTAACTTAAAGTGTCGTCACAGCCGGACGATTCTCCTCACTTCATTTCTTCTCAGGCAGCTTGTTCCAAATCATAACTTGTTCGTTTgattgcatttgtgttttggatcattaCCAGTGTTTCAACTCTGACATGTTTTCGTGAAGCCGCATTTCGGATTCGTGCGCATTTCATTTTGAGGTACTTTGGGAAGCTTTTATTCGTAATTCGAATCCAAAACCATTTTGCCCTGCAGacatttgatttttgtttcatttgtaatCTCGCATGTCAATTTAgcctgttttatttaaaaccaaagtTCCTTGCATATGAATCCAAAGTAGGATGCTCCGCTCATAATTGCGTGTTTTTGATATCAGTAATTCATAAGTGCTGGTATGCTAAAGTGTGGTCAAGTGCCTCCGGCGCTCGAAAGCCAAACGTTGATTTGCCATCAAcccaatgtgtgttttttttgttagttcgtTTAGAGCAGCGTGTTACGGAAAGGTCTCGAGGTTGGCGTTCCACTGACTCGCATGCTAAATgtgaaaaagggaaaaaagtgaGCTGCCTTCgctataaatgaatgttttggtCAAAATGTGAAACGAGCTGTAACATTTCTTTgcgtttttttcttctctaacCCATTCATTTCAGCGTTTCGCTTCACGAGGAGCTCAGCACTGGttctcgattttttttttatttatatttttttatttgtcctgGAAACTCAgtattttgcttttcttttcctttggATAAATGAGCACTGGGTGGATATGTGCATGAGAGAAGCCATTTTCGGTGGTTGTTCTGTTTTATAGAATGTCTTGCTGATGTTCGGTAGACTTTTGTTCTATGtttgtgcagaaaaaaataagttatcattaataaatgatacatacacaaatatctAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210959 lncRNA upstream 39601 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 332071 431624 ~ 434122 (+) True G142729
TU210760 lncRNA upstream 563018 202787 ~ 203175 (+) True G142672
TU210740 lncRNA upstream 569991 182416 ~ 196202 (+) True G142658
XR_006247457.1 lncRNA upstream 586144 172944 ~ 180049 (+) True LOC122326263
TU211038 lncRNA downstream 137478 916621 ~ 916963 (+) True G142866
XR_006247435.1 lncRNA downstream 269235 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 269378 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 269378 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 291218 1070361 ~ 1081301 (+) False LOC122326171
XM_043221955.1 mRNA upstream 10541 752820 ~ 755652 (+) True rx3
XM_043221828.1 mRNA upstream 15549 746242 ~ 750644 (+) True cplx4a
XM_043222081.1 mRNA upstream 23247 730792 ~ 742946 (+) True lman1
XM_043222066.1 mRNA upstream 43134 676866 ~ 723059 (+) True ccbe1
XM_043221008.1 mRNA upstream 271029 437774 ~ 495164 (+) True LOC122326268
XM_043221923.1 mRNA downstream 142 779285 ~ 786532 (+) True oacyl
XM_043221343.1 mRNA downstream 13892 793035 ~ 805935 (+) True alpk2
XM_043221060.1 mRNA downstream 99086 878229 ~ 901350 (+) True prlra
XM_043221057.1 mRNA downstream 122530 901673 ~ 915039 (+) True agxt2
XM_043221966.1 mRNA downstream 147215 926358 ~ 935922 (+) False LOC122326806
XR_006247444.1 other downstream 271695 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 373966 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 373966 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 448870 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1454516 2233659 ~ 2237195 (+) True G143321

Expression Profile