RNA id: XM_043221965.1


Basic Information

Item Value
RNA id XM_043221965.1
length 4841
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC122326806
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 926358 ~ 939559 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAGAGTTTGCATACAATTGACAAATGCTGACTATTTTAATCTTTCAGGAGGATATAGTTGCTGCCACAACGAGATCCGCTGTATGACTGCGTGTTATTAGTCACTTTTGTTTGCATCTAAGGTCAGGATATCATACCTTCTAAAATAACATCATGAAATCAATGAGGGAAGTTGATCTGGATACATACAGCTTGTCTTTACTTACGGCGAAAGAAGACATCCTGAATCCACGCTCGTCAACAAACTGGGCTCTATTCACCTATGATGGAATAATGAACAGACTCAAACTGGCAGATTCTGGAGTAGGTGGATTGAAAGAGCTGACGGCTAAACTTCAGCCTAGACGGCCGCTGTACGGGATGTGCAGGGTGGGCCAAGCTCAACCCCGCATCGCTATGATATTATGGGTAGGGAATGAAGTGGACGAGTACCGCAGAGCTGAGTGTGCCAGTCATATACCAGCAATAAGGGCCTTCTTTAAGGAAGTTCACATCTTTCTTCCTGCCCACACTTTGGATGAAATCACGGAGGAGAGGATCTGCACGCTGGCCTATAACGCTGCAGCTGTGACGCAGGGGCCGAGAGCGAGACCTAGTCGCCGCACAGAAGATAGACAGGCCATTGTGGGCACTAATTACAAGCGAACAATCGCGGCTGCAGAGATCCAGAGAATCCACAGAGATTCTTTTTGGGCAAAAGCCGAGagagaagaggaggacaggaaaaaggagGAACAGTGGAGGGCAGCAGAGGATaggaggcagagagagaaagaacgcCTGCTCCAGGAAAGGAGAGATGCAGTAGAGCGAGAGAGGAGGATGaatgaaaaagaacagaaaataaaggAGCAAAGgaGAATGCAGGCGCAAATGGAGGCAGAGGCCCAGAAACGGGAGAAAATAAAATGGGAGCACGAGGAAAGGGAGCGTGAAGAAGACGAAGTCAGAGCTAGATATTCACGCTCTCAATCAGAGGAAAAAGCTGCGGAGGCAGCAGCTCTGGTGTCTCAGCGTAGTATGAACCCCAGAGAGTTTTTCAGACAACTGTCCTCCTCAAGCCTCCACACAGCCTCCAGTCCCAGCTCCACATCTCCAGtcaGGAGTCCCTATAGACGACTACATCGCAGCCAGACAGACAATATCTTCAGTTTCAATGAATCACTGTCTTCTACACCTACATCCCCGTACAGATCATCAGTGGTATCACCTTACTTTCCCTCTACTCCCACAAACAGGAGCCCAATTCTTTTCACTAACACTTCTTCCTCGCTGCAGAATTGTGCAATAGTATCTACCAAAAGCCAGATCCAGCTATCTTCACCTAAGATGATGGAGTCACAGCTCCAAACTCAACCATCACCCACAACCAGTGCAACTGAATCTGCAATTAAAACTCCTGTGAGTGATATACTAGAAAGTCTGGTCTTTTATCCACCTCCACCAACCCCTGAGCAGCTCCAACCAGATGAATCAGAGATAGAGtttcctccacctcctcctggTTTTGAGAATTGTCCAAAATCATCTGTGAACCAACCTGAGAGAGTTGATGACCCCTTAGACCCTCTTTTTCCTACATCATGTCCTGTGGTTCCTGAGCCACCCAGCAGACCACTTCCGGTTCTTCCCAACGCTCCACGAACGATACATGACCTGGAAGTGCAGAGGGATTTTATTGCTCGGGCATTGGTTATATCTACAgttgaggaggaggatgaagggGATGGAGAAAAAGAGATGGAATACGAGGGGAAGGATGCAACTGAAGAAGAAGCAAAAAAAGGAGGTGGAGAAGAGAAGGCTGAAACTGGAGCGAAGAAGAGGAACAGAGGACAGGAGGAACATGATGGGATGACTGTGGAAATACACGAAAGTCAAAAAGGAACAAATGGCAAAATGATGGAGGGATATGAGAGTGGAAAAGATGGGAAAATGTTGGAAGAATGCGAGAGTGAAGAAAAACAAGGTGGCAATATTATGCAAGAACATAAGAGTGAAGAAGATAAGGCTGGGAAAATTGTGGAAGCTTTTGAGAGCGGGAAAATTATGGAGGAACAAGAGAGtgaaaaaatcatgttaaaatgtgtgCTAGAAAAAGAGCAGGATAgggaaaatacagaaaaacatgaGGAAGatgatttggaacaacatgaacgTGACAAAAAGATGGAAGAATATGAGCAAGATGGAAACCTCGTAGAAGCTTTGGACAGTAAAAAGGAGCAAGACAAGAAAAACATGGAAGTATTTCCgacagaaaaaatacaatatggGAGAACTGTGGATGAATGTGGGGAAGAAAATGAGCAAGAAGGGAAAATCGTAGAAAAATGTGAGGATGAGAATGAcggtgaaaaagaaaaatgtgtgaaatgtaaGGAAGAACTTGAGGTTGATAAAATGCAAGATGGGAGCATCTTGGAAAAACATAGAAAAGAGCAAGATTGCAAAATTATTGAAGAATTTGAGAAAATACAAAATTCCAAAATGATATTACAGTATATGCGAGAAGAGAAGCTAGATGCGAAAATTGTGGGTTCATTTGACAATGAAAAAGAACAAGACGATAAATGCATGGAAGTATCTGAAACTGACAAAATACAATATGAAACAATGATGGAAGAGTGTGTGCAAGAAAATGAGCAAGATGGAAAAACTGTGGGAAAACATGAGGGAGAAGATGAAAGTGAAAAGGAACAAGCTGGGGAAATTATGAAAGAACATgaggacaaaaaaatacaagatAGGAACATCACTGATGAACATATAAGGCAAGAAAATGAGCAAGATGGaaaaaatttagaaaaatgtgaaGAACATAAGAgtaaaagagaaaatggaagCAAAAAACAAGATGAGATAAGCATAGAattaactgaaactgaaaaattacattatgtGACGAAGATGGAAGAATGCGGGCAAGAAAATGAACAATATGGGAAAATTGAAGAAGAACAcctgaaagaaaatgaaaaagaacaggATTGGAAAATAACTGAAGACTCTgagaatgaaaaaatacaagATGGAGACAGAGATGAACATAAGAGTGACAAAGATGAAGGTTGGAACGTTGTGGAAGTATATGAGACTGAAAAAATACAGCATGTGAAAATTATGGAAGCATGTGAGCAAGAAAATAAGCAAGACGGAAAAAATGTAGAAGAATGTGAGGAAGAAGACGATGGCGAAGAACAAGATGGTAGAAGGTTGAAAAAACAGGACTGGACAATTGTAGAAGCGTCTGAGAGTGAAAAAGAGCACGATTGTAAAATTGAGGGAAGACATGAAGATGGTAGTCTGGAAGAGCAAGAGGATGAAAAAGATCAGGATTGGAAGATGACAGAAAACtgcaaaagtgcaaaaaaacagTGCGGGAAGATTGcggaaaaaaatgacagtgaaaacaaacaagatgaGATCACAGAAAGTCAACAGGAAGAACAGAACCAGGACGATGATGGAATGTCACATGTGGATGTAGATAAAGCTGCGAACGTGACTGTGCTCAGGAAGGAGGAATCGTACACAGAGGTTATAAAGAGAGATGAGGCCACTGAAGTAGGTGTCCAAAATGAGAAGGAACCTTTAATCCAGACAGACGCAGTTTTTTCCCAGTATGCACCGCTCTTCCCAGATTCCCATTCTACGGAGCCGTTTCCAATCAATGACGCATGTGTTTCTGAAACTATTTCAGCCACTcaagataaaaacaaaccaaagatGAGCTCAACTGATACCTCATCCCAAATAAACTTACCAACCATTCAGGTTAAATCAGATTTCTCTAGTTTGAACGATCAAAGCGATTCAGACATGAAAGAGAAGATCGAAATCTCCAAAAACACCACCTCTGGAGAACGGATGAACAGTGCGGTGGAAGGTGATCAGACGGATGCTGAAACGCTTCGAGAAGATACAACTGTGGACAGCAGCAGTGACTTGTCTGAGGGGATTGATGCTGAATCCAAAACATCAACTTTATCTGAGAATCAAGCCAGGACTGGACAATCAGACGAGGGGGAGGGGCTTGCACCTGTCTGTCATTTCCACGAAGACACTGTGGGCCTAAAATGTTGTATTGCTCATCAGCCGGATCTGACCAACGACGTAAGCCATGTTAAAGAGCGAGAAGAAGCCATATCACTCCCGGGCAGTTACTCAGATGTGGAGCAGCGCTCAAAATGTGATTCTGAGCTCGATCGAGTGAAGGAAGACATTAAACCTCTGGCGAACTGCGAAAATATCTCAGAAACACCCAACAGCAGGAGAAATGATAAGACAgccaatgaaaaataaagaacataatTGGAGGCATCATGGGAGCTCTGCAGCGATCATAGAGAAATATGACCAACAGATGTTTCTCTCGACCAGTCACTGAAGGCCTTTAAGTTATTTTCCTAAGATTATTCTCATATCTGCACagtaatgcaatatatatatatatatatatatatatatatatatataagaactgCATCTACAACACTGAAGATTTTGaatgtgcatacatttaaaaaacattcataaaaatataaaacataaatattgcatgacgtaaaaataaacaaagcacaGTTCTCAAATCATGCCGATCATCATGACACacaaatgatatatattatacactttattggaaaaaatgcattatattattaaaaaaacatgcttcaCTTGCGATTTTGACCCCACTGTAGGTTATGTATATTTACagaacatatatatgtatttattctttatttttcatctcgAGCAATATAAACTTGATTTTTACTTTCCAATAAAGATTTGCAACTATCTGACAAAATAGTAAATATGATGTTGCAGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211038 lncRNA upstream 9397 916621 ~ 916963 (+) True G142866
TU210993 lncRNA upstream 114303 759275 ~ 812057 (+) True G142832
TU210980 lncRNA upstream 120254 735722 ~ 806106 (+) False alpk2
TU210959 lncRNA upstream 199768 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 492238 431624 ~ 434122 (+) True G142729
XR_006247435.1 lncRNA downstream 108819 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 108962 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 108962 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 130802 1070361 ~ 1081301 (+) False LOC122326171
TU211152 lncRNA downstream 132709 1072268 ~ 1074041 (+) True G142941
XM_043221057.1 mRNA upstream 11321 901673 ~ 915039 (+) True agxt2
XM_043221060.1 mRNA upstream 25010 878229 ~ 901350 (+) True prlra
XM_043221343.1 mRNA upstream 120425 793035 ~ 805935 (+) True alpk2
XM_043221923.1 mRNA upstream 139828 779285 ~ 786532 (+) True oacyl
XM_043221922.1 mRNA upstream 147217 769023 ~ 779143 (+) False znf532
XM_043221937.1 mRNA downstream 3294 942853 ~ 948284 (+) True arid6
XM_043221177.1 mRNA downstream 45878 985437 ~ 990633 (+) True gtf3c5
XM_043221176.1 mRNA downstream 52432 991991 ~ 998077 (+) True LOC122326353
XM_043221175.1 mRNA downstream 59665 999224 ~ 1005090 (+) True LOC122326352
XM_043221222.1 mRNA downstream 66236 1005795 ~ 1015300 (+) True zgc:92275
XR_006247444.1 other downstream 111279 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 213550 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 213550 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 288454 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1294100 2233659 ~ 2237195 (+) True G143321

Expression Profile