RNA id: XM_043222161.1


Basic Information

Item Value
RNA id XM_043222161.1
length 3942
RNA type mRNA
GC content 0.44
exon number 13
gene id fam169ab
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2845780 ~ 2861350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatttcattttcaattttgattcatttggagcGTGGTTTGCCTCTCGCGACAGTTAAACGTAAGAGGAAAAATAGTAATCTCCTCAAATCCTGCACTTTAGAGATATTTGAGACCTCTCACATCCCGTAGAAAGCTGCTCCGCGGGTGCGCGCGCAGGGCTGAACGCGTCCGCGAGCTGACGCTGTTAACAACAAGCGGTGGATACGTGATAATACCGGCTATTGCTTAAACCCGCTCGGATATAAAACGCATAAACCCGCATCGTCATCGGGGTTAAGGGATGGAGTTCCCTATAGATGTATTGGTGTCTGGCAGACATGAGGACTTGGAAAGTTCAGCCCAGAGCTACATGAACAAACTGCTGTACAGCAACCCAGATAACACACAATACCTTACCCTGCCCAGCATGAGAAAGATCCGGATCAGTCCTGCCAGTGTTGGGTTTGTTCCTCTTTATGGAGCCAATCTCAAACACAAAGTCCTGGCTCTGTTTGCCCCTGAGGACCAGTTCACAGCGGTGGCATTGTTCTTGGCTGATCAGTGGTACGCAGTGGAAGATATTCTCAGAACGTCAAACCCTGCAAGAGAAGGCCTTGTGAAGGTAAGATCTGTGGGCGAGAGGATTGTTTTATATGTGCTAAACCGCATCATTTACCGGACGGTGGAAATGGGTTCTAGTGAGGTGCCGTTCCTGTGCCACGGAGAAGACGTCTTTGCCAAAATCCTCTGGAAGAATGGAGAGGCTGTGGGTTTCTACTCTGTCAAAGCTAAAGGTAGCTTGTGTAATAGCTTTGTGAGCCAGTGCTACTTACTTCCCGTCATGGACTCTATATTTGTGCGGAAGGATCACCGTGGTAATGGTCATGGCTTGCAGATGCTGGAGGACTTTGTGGACTCCTTTAAAGATGATGAACTGGGCTTGAAATACCCTTTAACACCAGCAATGCAAAAGGTATGCAGACAGTACCTGAGCACATACCCGGCCGATGTGGACCTGCTATGGGAGGTGGAAGGAGTTGGAGGTCCCTACCAGAAAGTGAAAGTGGCAAGCAAACTTTGCTCCATGACACTACAATGCAACCACAGCTCATGGgcagcagaagaaaacaaaaatggagAGGTTGCAGTTAATGAGGTAGAGATGACAGAGGAGAGCTGCCTGGACATCACGGAGGATGTGGTGGTAGTCAATAAACATCTCAAAGTAGCAGAAGAAATTAGCGACTTGCCCATTTCCACACGCACACGGAGCAGCgaacaaagacaaaagaaaaggcCACGGGAAGAACAGGAAGAGAGTGCCGTGGAGAATCGACCTGAAAAAATCAACAGAGTGGTCGAGCCAGAAACGGAGACAGAACCTGATGCCGTTTTGCCAGACACTAAAGAACACACGGATGGAGAAAGTGGAGGAGGAGAAGATGGAGCAGAAGCCTCTGTGCAGGTGGAGGAGCCTGCATCTAATGAGGGCCCTGCAGACACAGAAATTCTGGTGGCAGAAGTCAATGGAGAAATGACTGAAAGTCAAGAAGAAAGGAATGAGGTGTCTGCAGTAACAATAGTGGATCCACAGGTCACCCACGAGCTCCCTCTAGAGGCTGAACCTGTCATCCAAAATGGCACTTCTGAGGAGATGGCAGAGGGAGAAGCACAGGATGACATCACTGACACCCTTAACGAGTCTGAAGTAGCGGAGCAGATCAACCAAGAGCTTATTACTGAGGAGAAACAGGACACAGAGACAGAAGTTTCTTCTCCAATTGAGGAGGAAGAAGTTCAGCAGGAGCAGAAAGAGGAAGTGGCTTCCTCAGTTGAGGACGTAGCTTTGGCAGTTGAGGAAACCGAAGACACTGATCATCCACCAGCTGTTCCTGAGGCGCCAGTGATTCCTGTCAACCTGGTTGAGTGTGTTTCCTCTGTGCAGGACAGTGATGCAGTAGAGGAACCATCTGCTCCTGAGCTTGAAGCTCCACAGGAGGAGACATCTGCTTCTCCTAGTGCAGCAGGTGAAGAAGAGGTCGTTATAGAGACAGAGGAACCTGCTGTGAGCCAACAAGATGAGACACTCGAGACCGAGGAAAGCCAACCTGCAACAGAAGACTCTGAAAAAGAGGAGCCAGAGGAAGAGAAATTACCTGAGATGGATAAAAAAGACGAACCGAAAGAAGAGGAGGACACTGCCACCACTGAAgatgataataatgatgatgatgatgatgacgattaTGAGGGGAAAAGCTCAGACGAAGCTCATGATTCTTCTCCTGGGGTTCGAGTTCTTCGAGGTGGCAGGATCAAACCTGTCCCTCCAACACCCAAGCGCACATCCAGTAGACTGAGCAAAGCTGTGGTCATACAGGTGGTGGATGAGGAGTttgatgaagaagaagaggaggaggaggaggaggaggaggaggaaaagcTCACAAGCACCGAAGAGGAAAAGGGGAGCACCGAGGAAGATGAAGCTGCCGAACACAATTCgggagaagaggaggagccTCCGGTGATTGACAGGAGAGTGTTGCGGAGAAAAACCAAAGTGATCCAGTCCACGCCCACAAAAGCAAAAAGACGCAGTAAAAACTGATTACATTCGTTCTTCATCACACTCCAGTACACTCCATTCATAGTAGTAGTAGGCACTACTTAGTAGACACGCATACCACGATCTGTACGAGAGAGTACTGAGCATCTTTTATACTTGGGATAGGGTTTATAACAGGCGGTGTTCACAACATCtagtttttggttttggttCAGTTTTTGTCTTATgactaaaagagaaaaatgaaaacaaaatgggaagtatttcataataatatgttttagaAACAGTCCTTGATTTATCGTTCTGACTGCTCACAATTCacaaaatctgtcattttaatcTCCTTTACTTTCGGTTTACCTTATGCTTATTGAATGCATCTTAAACTGCTTAAAAAGCAGCTATAAGCTTGCAGTTTTACAATGTGAAGGTCTAATATTAGGCGTGCTGCTGTGGATTGCATTTCACCGTTATCGTATCAGTTTTTGTTCtcacaaatgttttgattttaattttgcttCACCTCAcactatacatttttaaggaGGTCCTTTCACGTTTGTTACTGTCTTTTAGATTATTATGATCCATAAAAATTACGTGAATGAAAGCATTGCTGCGCACGCCCGTATTCACACTTAAATATGCAAGTATGTTTATACCTGAGGAAAGTCCAggtttatatatagtttacatGAAGGCTAATATGCGTTTAGCATCCAAAACAAATTAGCgtttaaatgtcttattttaaataCCAACTCTACATTATATTAAGCTGAAATCTAGTACATAAAATGAGTGGTGAAAGTGGTGAATCTTAGTAATTGTGGCTATAACGTAAAATTAAGGCTCGTGTTGTCACCCATTTTAGTCATAGTTTGTTTCGTTGACGTCGACCCGACCCGACCtcccgcaaaaaaaaaaaaaaaaaaaatcatattttgttaAAGCTGTGAAAGAAACTCACacgtttcagtttttttgttttaatgtgggTGGCCACACGAGGGCGCACTTGGCTGTTAAAAAACCCCATTGCCCGCATCTCTTCACACTCCTTTCAAGACTGTTGTCTTCGCCGTTGTCTTATTGTTGACACCTGAGGTCAGTTGCTTCCATTTTTATATCCGGTGAACATACGGAAACGAAAGGACCTCTAGAATCGACCTTTATACGTGTATTCTTCCAGGTTTCCAGGGTCAAAGTTCACTTTGTCGACCAGAAATCAAATACAAGTAGAAATATTTTGATCACTATCTTGAGtgctttaaactttatttacttgttttaggTGTTTGAGCAATATTTTTCTGGAGTAGTTTTCtcaaactgtgattttttttcttcttctttttttcccctgtagTAAATAAATACCTTTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211940 lncRNA upstream 15424 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 44432 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 302473 2487403 ~ 2543307 (+) True G143385
TU211725 lncRNA upstream 355580 2426489 ~ 2490200 (+) True G143349
TU211736 lncRNA upstream 441690 2402747 ~ 2404090 (+) True G143356
TU211960 lncRNA downstream 1422 2862772 ~ 2863017 (+) True G143491
TU211980 lncRNA downstream 68912 2930262 ~ 2937617 (+) True G143509
TU212075 lncRNA downstream 453827 3315177 ~ 3315473 (+) True G143578
XR_006247518.1 lncRNA downstream 474911 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 627161 3488511 ~ 3492565 (+) False G143590
XM_043220871.1 mRNA upstream 564 2842705 ~ 2845216 (+) True LOC122326157
XM_043220872.1 mRNA upstream 564 2842705 ~ 2845216 (+) False LOC122326157
XM_043220873.1 mRNA upstream 564 2842706 ~ 2845216 (+) False LOC122326157
XM_043221727.1 mRNA upstream 8531 2831751 ~ 2837249 (+) True gcnt4b.2
XM_043221728.1 mRNA upstream 8531 2832303 ~ 2837249 (+) False gcnt4b.2
XM_043221159.1 mRNA downstream 93429 2954779 ~ 2956580 (+) True LOC122326345
XM_043221156.1 mRNA downstream 95836 2957186 ~ 2964676 (+) True LOC122326342
XM_043221157.1 mRNA downstream 104816 2966166 ~ 2976051 (+) True LOC122326343
XM_043221981.1 mRNA downstream 430347 3291697 ~ 3294008 (+) True LOC122326816
XM_043222177.1 mRNA downstream 436640 3297990 ~ 3320013 (+) True LOC122326950
TU211695 other upstream 608585 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1616735 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1689638 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1689638 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1790433 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 85502 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 454406 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 456885 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 753810 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 840079 3701429 ~ 3704397 (+) False G143650

Expression Profile