RNA id: XM_043222197.1


Basic Information

Item Value
RNA id XM_043222197.1
length 930
RNA type mRNA
GC content 0.32
exon number 1
gene id LOC122326971
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5652309 ~ 5653238 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATGTGAATTTTACAACATACACCCTGATGGAACCACACAATGCTAAATCATTCAAGTGTATCTATTTCACATGCTTTTTGTTCCTCTATGTTATAATACTGTTTGTGAACATTTGGCTCACTGTAGTCATTGTCTTAGAAAAAGCCCTTCATGAACCAATTTACATTCTTCTGTGTAATCTTTGTGTAAATGATGTTTATGGAACAACAGCATTTTATCCTAAATTCTTGCATGATTTAATATTGAATTCATATGTAATTCCATCATACATGTGTGCGTTACAGGCTTTTGTTGTTTATACTTATGTCATGTGTGAATATTCTACATTAGCAGTGATGGCATACGACAGATATGTGGCCATATGTCAGCCTTTAGAATATCACTTAAAGATGAACAGATTTTCATGCAGCATATTACTTTGCTTATGTTGGGCATTTCCTTTTCTTAATATGTTCATTGCAGTTTTTTTGGCAAATACGTTGGTTCCCTGTAGAAATCATATTGAAAAGTTGTATTGTGACAACTGGTCAATAGTAAAACTCTCATGCGAATCAACTGTCATCAATAATATTTatggatttatatttattgcattgtattttggCCTTGTGATTGTAATTATAATGTCCTATATAAAACttattatttcatgtaaagTCTCATTGGAGTGCAGAAGGAAATTTTGGCAGACATGTGTGCCTCATATAGTTTCATTGATAAATCTCACTGTTGCAATACTGTTTGATACCATCTACAACAGATATGGATCAAGTGATTTTCCTGTTCATCTGCGTAGTTTTATGGCTTTAGAGATGATTGTAGTGCCACCTCTAGTCAATCCTGTAATCTATGGCTTAAAACTAACAGAAATTCGCAAAAGAAtcttaaaattatgtataaattttaccaaaaatgacaaagtaTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212929 lncRNA upstream 19458 5632041 ~ 5632851 (+) True G144126
TU212867 lncRNA upstream 112845 5538200 ~ 5539464 (+) True G144081
TU212861 lncRNA upstream 134373 5502033 ~ 5517936 (+) False kcnk12l
TU212722 lncRNA upstream 277387 5366192 ~ 5374922 (+) True G143990
TU212747 lncRNA upstream 323904 5327230 ~ 5328405 (+) True G144007
TU212933 lncRNA downstream 31590 5684828 ~ 5685097 (+) True G144129
TU212934 lncRNA downstream 52302 5705540 ~ 5706835 (+) True G144130
TU212949 lncRNA downstream 85227 5738465 ~ 5741905 (+) False LOC122326918
XR_006247429.1 lncRNA downstream 139626 5792864 ~ 5794604 (+) True LOC122326140
TU212961 lncRNA downstream 194703 5847941 ~ 5848570 (+) False G144152
XM_043221967.1 mRNA upstream 4974 5646442 ~ 5647335 (+) True LOC122326807
XM_043222051.1 mRNA upstream 21000 5627008 ~ 5631309 (+) True tgfb1b
XM_043220902.1 mRNA upstream 26269 5623883 ~ 5626040 (+) False b9d2
XM_043220903.1 mRNA upstream 26269 5623896 ~ 5626040 (+) True b9d2
XM_043220917.1 mRNA upstream 122106 5524580 ~ 5530203 (+) True rtn2b
XM_043221975.1 mRNA downstream 8486 5661724 ~ 5662650 (+) True or62b3
XM_043222072.1 mRNA downstream 12122 5665360 ~ 5666286 (+) True or62b5
XM_043222198.1 mRNA downstream 16177 5669415 ~ 5670368 (+) True LOC122326972
XM_043222199.1 mRNA downstream 19106 5672344 ~ 5674110 (+) True LOC122326973
XM_043222201.1 mRNA downstream 25832 5679070 ~ 5686068 (+) True LOC122326974
TU212863 other upstream 141563 5508665 ~ 5510746 (+) True G144077
TU212862 other upstream 144014 5506555 ~ 5508295 (+) False sdhaf1
XR_006247443.1 other upstream 147085 5501103 ~ 5505224 (+) False qpctlb
XR_006247485.1 other upstream 626681 4947584 ~ 5025628 (+) False tnksa
TU212943 other downstream 79202 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 79202 5732440 ~ 5734253 (+) False neu3.1
TU212957 other downstream 141528 5794766 ~ 5796462 (+) False LOC122326980
TU212951 other downstream 144460 5797698 ~ 5799528 (+) False LOC122326980
TU212962 other downstream 194703 5847941 ~ 5849053 (+) True G144152