RNA id: XM_043222211.1


Basic Information

Item Value
RNA id XM_043222211.1
length 1926
RNA type mRNA
GC content 0.44
exon number 9
gene id htr3b
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6715005 ~ 6720847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAAAATCAATTTGCTAGAGTGGCTGAGTTAGTCCCAGAGAAACCCAAGAGATCTGCTCTGAACCAACTCACCAGGTTACTGCTTCGCAAATATAACTGTGGAGTCCGGCCTGTGCAGAACTGGACCAAACCAACTAAAGTTTACATTGACCTTATAATTCAATCTGTTCTAGATGTGGACGGACAGACTCAGAAAGTGACCACCAGCATTTGGTATCGCCAGATATGGAACGATGAGTTTCTTGTTTGGGATCCCGAAGAGTTTGACGGAATCACTGAAATATCTCTGTCCTCGGATGCCATCTGGGTGCCTGATGTCATCATAAGTGAATTcgtCGATGTCGGCAAATCCCCAGTCATCCCATATGTTTATGTCAACTGCTCAGGAACAGTAAAAAACTACAAACCCATCCAGGTGGTCTCAGCCTGTCACCTGGAGATTTATGCCTTTCCCTTTGACAAGCAGAACTGCACTCTGACCTTTCGCAGCTGGCTCCACTCAGTGAATGAAGTGGATTTAGCTCTGTGGAGGCCCGCCGAGGAAATCGCCAATGATACCAGAGAGTTCATGAACGATGGTGAATGGGAGCTGCTGTCTGTCCCTTCTCACTACTGGACACTGAATCTAGAGGACAGAGACTACGCGCAGATTCAGTTTAATGTGCTGATCCGCAGGCGCCCCCTGCTGTACGTGGTAAGTCTCCTCATCCCCAGCATCTTCTTCATGGTGGTGGATGTCACCAGCTTCTATCTGCCTCCGAACAGTGGCACTCGCATCACGTTCAAGACCAGCATTCTCTTGGGCTACACTGTAATCAGAGTCAATCTGATGGATGAAATCCCTGCTACCGCTATTAAGACACCCCTCATTGGGGCCTTCTTCGCTGTCTGCATGGCACTGCTACTGCTGAGTTTGGCCATGTCCATTTTTGTAGTGAAGCTTTTGCATTACAGTGAGAAGGAAGTCAAGGAGATGTCCGTGTCTGCTTGTTTACTAGACAAATACGGCTCAATGGATCAGAGCTTTATTGAGAGTGCTTTCACATCAATGAAAACACTGGATGATATGGAGCAGTCTGGAGGCTACGAGTTTGATCTCTCTCCAGAGCCAGACCTGTTCTCCCTGACAGAAGTCTCAAACAATGACTCTCCTCTGGAGAAGATCCTGGAGGAGGTGGTGTCTCTCAGACTGTACCTTCAGGAGGAGGACAATGAGGGCAGCTCACAGTCTTACTGGGTGGAACTGTGCCTGAAAGTGGACAAGCTCCTCTTCTGTGTGTACCTGCTACTTATGTTCATCTATGTCATGACTCTACTGCTGCTCTGGGGTGTCTGGAGCTCTGCCTGAAAGTCTGAAGGAGGTGGTAGGGCAAAAGACATGTAATGAAAAGAGAAGAACAAAACCGAGGTAGAGATGAAGGAGAAAGTAAAAAAGTAGGTTCAGTTTTAGAgtacaattaattacatttgatcCTATTAACAGATTTTCATCTAtgatataaaatgaacaaaaattatataGGTGGAGTCCTTAATTGTAAAACGTGATTAAACttaccttaaaggaatagttcacccaaacatgaacattctgtcatttactcagcTTTGAGTAGTTCCAAGTCTGTATGAATTCTTTGTTCTTCCGAACACgaaggaagatattttgcagAAACTTTGTTACCAGGCTGTTTtaggtcaccattgacttccatagtaggaaagaAATACCCAAAACAGCCTAGTTACGAAATCATAATGACTAGCTGCGAGCAAGTTGCCTTCATGTTGTACATGATTATTTGccacagaataaagaaaaacaaactaatgaaCAAATGTCTTCTATGCTTCTCTTATTTTCGCTAATAACactcaaatgttttattttaattgtagcGTTTGATGATAAGAGAATGTCTCA

Function

GO: NA

KEGG:

id description
K04819 HTR3; 5-hydroxytryptamine receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213331 lncRNA upstream 9968 6702902 ~ 6705037 (+) True G144371
TU213290 lncRNA upstream 91429 6622464 ~ 6623576 (+) True G144353
TU213277 lncRNA upstream 107659 6606847 ~ 6607346 (+) True G144348
TU213276 lncRNA upstream 108975 6605481 ~ 6606030 (+) True G144347
TU213267 lncRNA upstream 130191 6582930 ~ 6584814 (+) False cfap300
TU213319 lncRNA downstream 11223 6732070 ~ 6736286 (+) True G144366
TU213320 lncRNA downstream 11223 6732070 ~ 6796946 (+) False G144366
TU213315 lncRNA downstream 324214 7045061 ~ 7046792 (+) True G144363
XR_006247426.1 lncRNA downstream 339082 7059929 ~ 7066941 (+) False LOC122326110
TU213372 lncRNA downstream 339225 7060072 ~ 7067994 (+) True LOC122326110
XM_043222173.1 mRNA upstream 86235 6624931 ~ 6628770 (+) True alg8
XM_043220997.1 mRNA upstream 94862 6611003 ~ 6620143 (+) True pcf11
XM_043220948.1 mRNA upstream 104252 6607753 ~ 6610753 (+) True ddias
XM_043220949.1 mRNA upstream 106021 6607753 ~ 6608984 (+) False ddias
XM_043220820.1 mRNA upstream 121043 6587740 ~ 6593962 (+) True birc2
XM_043221901.1 mRNA downstream 1319 6722166 ~ 6727215 (+) True htr3a
XM_043221902.1 mRNA downstream 1319 6722166 ~ 6727215 (+) False htr3a
XM_043220788.1 mRNA downstream 188711 6909558 ~ 6915682 (+) True LOC122326099
XM_043220791.1 mRNA downstream 195309 6916156 ~ 6924635 (+) True LOC122326102
XM_043220793.1 mRNA downstream 327090 7047937 ~ 7051098 (+) True LOC122326105
TU213247 other upstream 179211 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 789478 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 790644 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 791510 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 865952 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 1186617 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 1187208 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 1187208 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 1187208 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 1486956 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile