RNA id: XR_006247494.1


Basic Information

Item Value
RNA id XR_006247494.1
length 2047
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122326582
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4563334 ~ 4578128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGAGCGGAACCCGCTGGAGGGGCTCGAGTAGCTCGTCCTGGTGTCCATCACCCTCCGGTAGGGGCTTCCTATAGCGTCTATCGGATAACTCATCCGGACGGACGGGGTGTGAACGTGCAGATGAACAGAAGAGTGAGTTCCCTGTGACGGAGCGGCCAGGCTCTCACCCACCACCCAACCACATCCGTTTCAGGAACTCCTGGACTCACTAAGGCGCTCCATCCATCAGTTTCACCGTCACCATCACCCACACCATCAGGACCTACACTGAAACAGACATGTCAAACATGTTGGGAAGGATATGGACACAAGGAATGTCCAGAGCACCTGTCACCCAGTCAGTCAAGTTCTCCAAGTGTCTCCTGTGTCTCTCCCAGTCCCCGAGTATCTCTGGTGATTCTTCCAGTGCTCCGTGTATCTCCGGCGATCTCCTGTGCAGACTGTGCTCCTCAAATCGTTCCTGAAAGGCAAAGAAACCCTGGTGAAACCTTCTGCTGTTTAGATACTCACACGTCTCAAGTCCAGTCTTCATTTCCTCACGTGTGTCAATAAacgtgtgtgaatatatattttacctaCCTTCTGTGTAAAGTCCATTCGGTTACATTCccttttatatacatttttttccgattaataacttttttcaataatatttttcatgtatttttttctccatgccatcctaattttaattacttgTGAATGCAGTAATTTTGCCAttgctttactttttaatatattttacttgtgtttcatttattacatgCATCTGTCTCGTATTGCACTGTATGCAAATGGTTAATGGATCCCACAGAGGTGAAAGAGGTCACTGAAAATCATCAATAAGCAATTAAATGCTCATTAACTGTTGACTTAGAGTTGTCAGTTGCAGTCTTTTCACAGCAGTACTGAAGTGTTAATACaacctcttctctctctctctctctctctctctctctctcgaatTTAATCCGTTTTATCTCCTCTTTTACATTCAGTGGTTCCACTGGGCCTCATTTGTTCACCATCTAGCATTACTCCCTCTCCTCAAATTCACAGCCAACGCCCAGCTTCTGCAGTACTGCAGTCTCTCCTTTTCCAAAAGTCTCACCCCTCCTCTTGATCACTCTCTAGTTATCTGCAGtgaggaggagggagaggaggagagatgCCGTGAGGAAGAGCACACCTCACGActcgcgctgctgctgctgctgcaacaCACCCAAGGATCACACGACGGCCTGGCAGTTCATCACAATTCATTCCATCGACAGTCACTTCGGCTCGCAGAGTCTACGTTTGCtcataactctctctctctctctctttcttgcaTGACTGTCCTCCCTCAGGCCCCTCATTAATCAGAGCTCTCTAACCCGTTGCCCTCTCACAGGAGAGACAGCATCAAGACCTTGGTTCTTCAAGCTTCTTCAAAACTCTTGGGAGGTCCTCTGTAAGCTGGCCCATAACATTGCAACAGATTTGTCCGATCTAATCCTTACTAActtgcataaaacattaaacaagaCTAAACTGCCTTTTGCTGCAtagaaaatagcattttaataattctatCCCGTTTGGTATAAGAAGAATGCCTTGATTTTGTTTTGAGTTACTGAAGGTTTAACTTACATGAAACTTTGAATAAGGCTGAACTGCATCTTCCTGCAAATGATTCATAATacattacttatttatataatgtaaaaagatATAATCTGTGACGTTTTTCTATAAGGtatcatttgttaacattagttcatgTGTTACCTAACATGActgaacaatgaacaatacatttattactctataatagtaataaactaGTAATCtagttacataataaaaaaatagatttgtttattttttgttcatggtagttcacagtgcattaactaattattaatgttaactaattatgtcaattaattagtaaatgctgaaataagcATATTATTGTTCATTCTCAGTTCAtcttaactaatgaaccttattttaaaattatcatATAATCGAATCCagaatatattaaa

Function

GO: NA

KEGG:

id description
ko04961 Endocrine and other factor-regulated calcium reabsorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212360 lncRNA upstream 10866 4551421 ~ 4552468 (+) True G143745
TU212347 lncRNA upstream 39154 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 454656 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 476808 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 641615 3919733 ~ 3921719 (+) True LOC122326258
TU212368 lncRNA downstream 10598 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 173089 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 173779 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 221974 4800102 ~ 4862403 (+) True G143872
TU212577 lncRNA downstream 313010 4891138 ~ 4893087 (+) True G143887
XM_043222093.1 mRNA upstream 5708 4554358 ~ 4557626 (+) True nefla
XM_043221386.1 mRNA upstream 18702 4538262 ~ 4544632 (+) True crkl
XM_043221211.1 mRNA upstream 39298 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221210.1 mRNA upstream 42505 4510370 ~ 4520829 (+) True smpd4
XM_043221519.1 mRNA upstream 204031 4338972 ~ 4359303 (+) True LOC122326553
XM_043221560.1 mRNA downstream 2506 4580634 ~ 4583302 (+) True rpl17
XM_043221810.1 mRNA downstream 7762 4585890 ~ 4588458 (+) True nkx6.1
XM_043221811.1 mRNA downstream 7762 4585890 ~ 4588458 (+) False nkx6.1
XM_043221551.1 mRNA downstream 108788 4686916 ~ 4690339 (+) True abraxas1
XM_043221441.1 mRNA downstream 114064 4692192 ~ 4698582 (+) True helq
TU212330 other upstream 177122 4132436 ~ 4386212 (+) True G143726
TU212324 other upstream 349562 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 449601 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 858937 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 2923 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 3790 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 4971 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 127073 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 152475 4730603 ~ 4730881 (+) False slc45a2

Expression Profile