RNA id: XR_006247515.1


Basic Information

Item Value
RNA id XR_006247515.1
length 1530
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122326834
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3763332 ~ 3769556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTGTCTGAAACGTTTCATTCTTGGTAGCAGGGAAATATGATGTGATTTAATCTTTGAGCCTCCACCCACCGTTTTTCGTACTCAAAGGAGCTGTAACGCTTCAGTGAGGTCTCTTTAATATCTGTGGCCAGAAGACTAAACCAGACTTACCAGAAGAGCATTACAGATTTGTACATTAACTACAGTAACTAGAGAGTCTTCAAGCCTTccactttttttaaacgttgTATGTTCTTGTACAGTAGTCTCTTTCATTGCCACAGACCAGTCTTATCTTGTGTATAAGGATATCTTACATAAGACAGGAAATCAGAGGACAGGATCTGATTTAATCACGTCCCTGCGGCATGGAGCGTTGCACACAGGACGGCCACTAATGATGGGACCTGCTCCACTTCATCAAAGaaagtgtttctctctctctctctctctctctctctctctctctctctctctctctctttctccctgtCTGTCTTGCTCCACTCTCGGAGGAGCAAGGATTCAATCCATTAAATATAGACAAGAACGGTCGCACAATGAAGAACCTTTTCTGACACTCGCCATTCGACGTTGGATTATAAAATCAGTCTGAAATCTACATCTAGCTTCTCAGTGTTCAGATCATTGATGGGAAAAGACCATCCGCTCACACGGGCTACGACTATAAAGCAAATTTCATTGGTTTTCTGGCCCTATTACCACTCAGATCCATCTGATTCTGTTATCCACCAGAGAAGGTGGGGAGGATCAGATCAAAGCCTCTGTGGAAGGAGAGAACCTTCTTTGTGAAAATCTGTCTCAGCATTGCAAAGCCAAAGAGATGAAAGGAAGATTAATAGAGGTTGACGATAGCCACTGACACATTCAGAAATGACGCAATCAAATAAACAACGGCTTAACATTTAATACAACCAGAAGATCTGTGTCGTATAtttctggagaaaaaaacagacgAGTCCAAACACAAGCTAAGAATTAGGCATAAACATACATCACTAttcacaataaattaataatcacaTCCCGCAGGATCTTTATACCCctcctcctgctccttccttccttccaaATCTTCATCCCttcctccctctttctttccATGGTCATAATCAGCGTCAGCATAACGAAAGGCCCTGTGGATGGCATTTTAGTTTAGCACTGTCAAACAATCCCAGCACTTAGCACTGCGGAATGACAGCTTGTTCTATATCATCAAAGCGCCTTCACTGAGAATTTGAAGCGGCCCTGTTATAGGCATTTGCTGTGAGTCAGCACATACATGACTGCTTCTGAGAACTCAACACTAGTCTAATAAAGtgtcttgttttgtctttccctactaaaaaaacagcttaagcTGGTGCACTGATTCAGTTTGTTTCCCACTCTGTTCGGTTGCTAGTTTTAGGAAGGTTTTGGGTTCTTTTCAACAATATTAACAACAGAAGTGCAACGGAAATAGcagatctatttttttttttatattgtgccTTACATCCGAGTAAAATTTTAGTTTCACCAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212203 lncRNA upstream 11134 3751599 ~ 3752198 (+) True G143656
TU212176 lncRNA upstream 153282 3608919 ~ 3610050 (+) True G143638
TU212097 lncRNA upstream 270745 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 270767 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 270767 3488511 ~ 3492565 (+) False G143590
TU212214 lncRNA downstream 33902 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 150177 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA downstream 151524 3921080 ~ 3921279 (+) False LOC122326258
TU212299 lncRNA downstream 305971 4075527 ~ 4086526 (+) True G143717
TU212327 lncRNA downstream 337245 4106801 ~ 4108678 (+) True G143725
XM_043220941.1 mRNA upstream 14925 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA upstream 14925 3737381 ~ 3748407 (+) False stom
XM_043220943.1 mRNA upstream 14925 3737383 ~ 3748407 (+) False stom
XM_043221479.1 mRNA upstream 129157 3617039 ~ 3634175 (+) True tsc1b
XM_043221609.1 mRNA upstream 160852 3544243 ~ 3602480 (+) False bcr
XM_043221653.1 mRNA downstream 17203 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA downstream 17205 3786761 ~ 3918707 (+) False rxraa
XM_043221650.1 mRNA downstream 17206 3786762 ~ 3918707 (+) False rxraa
XM_043221652.1 mRNA downstream 17209 3786765 ~ 3918707 (+) False rxraa
XM_043221654.1 mRNA downstream 57681 3827237 ~ 3918707 (+) False rxraa
TU212191 other upstream 58935 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 58935 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 58935 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 148101 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 443453 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 337245 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 362880 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 439704 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 811495 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 812362 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile