RNA id: XR_006247518.1


Basic Information

Item Value
RNA id XR_006247518.1
length 339
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122326852
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3336261 ~ 3336689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCcgttttccttcttttttaacacaaaacgAGTTATTTGCCTCAGGAATGCGTTATGCGTATAATACATACAGTAGCCATGCTGTTTTCCGTCGCCTACGGAAGCCAGCTGAGGCCAAAACACTGCAAACTCACCCGCGCACGCACGCGCAGTATCGGATGGGATTACAGGTCGCCTTATATCACTTGTAAATATTCTACAAGTCTCAGTTCAGGTAGCACTCCGGCATGAAAAAGCACGTTAAATTCCTTGAAAACAGCGATAAAAGTCGTCTGCACCACAAAAAGTCTCTTCTGCCTTTAAGGCCTTTTGGTCTCAACCATGTGCAAGCTGGTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212075 lncRNA upstream 20788 3315177 ~ 3315473 (+) True G143578
TU211980 lncRNA upstream 398644 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 473244 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 505905 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 534913 2800730 ~ 2801348 (+) True G143465
TU212095 lncRNA downstream 151822 3488511 ~ 3492565 (+) False G143590
TU212097 lncRNA downstream 151822 3488511 ~ 3492587 (+) True G143590
TU212099 lncRNA downstream 151822 3488511 ~ 3492565 (+) False G143590
TU212176 lncRNA downstream 272230 3608919 ~ 3610050 (+) True G143638
TU212203 lncRNA downstream 414910 3751599 ~ 3752198 (+) True G143656
XM_043221929.1 mRNA upstream 6456 3326500 ~ 3329805 (+) True LOC122326784
XM_043222177.1 mRNA upstream 16248 3297990 ~ 3320013 (+) True LOC122326950
XM_043221981.1 mRNA upstream 42253 3291697 ~ 3294008 (+) True LOC122326816
XM_043221157.1 mRNA upstream 360210 2966166 ~ 2976051 (+) True LOC122326343
XM_043221156.1 mRNA upstream 371585 2957186 ~ 2964676 (+) True LOC122326342
XM_043222180.1 mRNA downstream 296 3336985 ~ 3338965 (+) True LOC122326952
XM_043220834.1 mRNA downstream 139294 3475983 ~ 3480494 (+) True LOC122326141
XM_043221150.1 mRNA downstream 157295 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA downstream 157304 3493993 ~ 3497228 (+) True LOC122326336
XM_043221148.1 mRNA downstream 162956 3499645 ~ 3502742 (+) True gpn3
TU212079 other upstream 16382 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 18366 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 389338 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1099066 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2107216 1228013 ~ 1229045 (+) False LOC122326311
unassigned_transcript_2519 other downstream 278471 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 364740 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 364740 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 364740 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 770112 4106801 ~ 4113733 (+) False G143725

Expression Profile