RNA id: TU219656


Basic Information

Item Value
RNA id TU219656
length 883
lncRNA type sense_over
GC content 0.55
exon number 5
gene id G148557
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1378898 ~ 1431339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTGATCGAGCAGCGACAGCCCAGTTTAAACAACGAGAGCCGGCCTCGCAAACAAGCGCTCTGCCAAAGTCGGCCTTGAAGAGGTCAGAGTGTTTTCTGGGCCTGATAAGAGCGCGGCGCGTCCGAGTGCCACGTTATCACACGCTTTGAGCAAATACAGCGGCGGCGAGCCCGGAGCCCTCTTTCCGtcgagcagcagcagcagcagcagcatgtcGGCCCTCAATGCCTCGCTGGGGTACTTCCTGGCGGTCGTCGGGGCGAGCGCGGCCGGCCGGGTGCTGTTCTCCCGCTGGGCCTTCCTCGCCGAGTTCACCGCAGCGTTCGCGCTGGCCGCCTGCCGCCTGGAGGTGGACACCTCGTCCTGAGGGACGCCTCGCGGCTGCTGCAGGTCCCCGTCTTCGCCGCGCTGCTCACCTTCATCGCCTACGCAGGAAATAACTACACGTCTGGGTACGTGAACCCGTCGCTGGCGTTGGCCATGACCTTCACCTGTCCGGGACACAGCTTCTTCACCTACGCTCTGGTCTACTGGCTCGGGCCCCTGATCGGCATGAGCCTCGCGCTCTTCCTGTATTTGGGAAACATCCCGCTGCTCTTCAGCAGGAACCTGCTTTACTCGAAGAAGACGCGTTTCCGGCTTCCCAAAGGAAAAGGTCCAGAAGACAAGAGCAGCTGAAGAGTTCAGACCGGTTGTGCATTTAGGAGCCTGagaacactttatttaacacaggaaaaatacttataaaaaaggaaataattatGCAGAAgtacaggttaaaaaaaagagtgatgTTGTGTCTGTACATGGCACTTTGAGCTAATATTTAGAGTACGccacaatgtaataaaatcatttttacgtAaaaaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219516 lncRNA downstream 30204 1284070 ~ 1348694 (-) False G148517
TU219555 lncRNA downstream 54125 1246448 ~ 1324773 (-) False LOC122328053
TU219549 lncRNA downstream 88213 1194612 ~ 1290685 (-) True G148524
XR_006247768.1 lncRNA downstream 109827 1259718 ~ 1269071 (-) False LOC122328053
TU219553 lncRNA downstream 120928 1246448 ~ 1257970 (-) True LOC122328053
TU219671 lncRNA upstream 3376 1434715 ~ 1435439 (-) True G148569
TU219672 lncRNA upstream 3376 1434715 ~ 1435439 (-) False G148569
TU219453 lncRNA upstream 13922 1445261 ~ 1447360 (-) True LOC122328029
XR_006247740.1 lncRNA upstream 15181 1446520 ~ 1447336 (-) False LOC122328029
TU219533 lncRNA upstream 21317 1452656 ~ 1977860 (-) False G148517
XM_043223828.1 mRNA downstream 226505 1141558 ~ 1152393 (-) True LOC122328117
XM_043223824.1 mRNA downstream 330661 1038827 ~ 1048237 (-) True LOC122328113
XM_043223599.1 mRNA downstream 348454 1022748 ~ 1030444 (-) True LOC122327917
XM_043223601.1 mRNA downstream 349960 1022748 ~ 1028938 (-) False LOC122327917
XM_043223590.1 mRNA downstream 367291 1000531 ~ 1011607 (-) True lamb3
XM_043223605.1 mRNA upstream 139137 1570476 ~ 1865956 (-) True LOC122327919
XM_043223606.1 mRNA upstream 139137 1570476 ~ 1610253 (-) False LOC122327919
XM_043223607.1 mRNA upstream 139137 1570476 ~ 1574910 (-) False LOC122327919
XM_043223717.1 mRNA upstream 148951 1580290 ~ 1582417 (-) True LOC122327995
XM_043223719.1 mRNA upstream 151676 1583015 ~ 1584544 (-) True LOC122327997
TU218822 other downstream 545523 831975 ~ 833375 (-) False arl8a
TU218899 other downstream 590745 783863 ~ 788153 (-) False srsf3b
TU218900 other downstream 590745 783863 ~ 788153 (-) True srsf3b
TU218901 other downstream 590745 783863 ~ 788153 (-) False srsf3b
TU218891 other downstream 699001 675794 ~ 679897 (-) False G148119
unassigned_transcript_2535 other upstream 1518 1432857 ~ 1432930 (-) True trnai-aau_112
unassigned_transcript_2536 other upstream 2106 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219681 other upstream 30534 1461873 ~ 1463176 (-) True G148573
TU219728 other upstream 152405 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 212371 1643710 ~ 1654340 (-) True G148574

Expression Profile