RNA id: TU219672


Basic Information

Item Value
RNA id TU219672
length 405
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G148569
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1434715 ~ 1435439 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGGTTCTTGCCATTGAACTTCCTCTAACCTGAGACAAAACTTTCATGTTATGAAATGTGTATATGACGTACTTCGAAGAAGAGTAGCATTTCAGTTGATGTAGTTAACCAAAAGCAGGATGCGTAGATTAGATAggtgtatgtttgtgtacatgaacacttttcttgttgttttagTAACTAACAGTTTATTACGAAGTAAATGCAGTTGTCAAGAAGTCACAATGTAAGAATTGATAactatttttatgcttttcagCCACTTGTTTTGCAAGTAAAAGCCGGATTCCTGCAAACTTCTGTGAACAATACAGTCATATTGAAACATTGTGTACATCTCTTGTTCTTCATTAAAAGAGGACTTGAAACTTGAGATTGGAAaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219656 lncRNA downstream 3376 1378898 ~ 1431339 (-) True G148557
TU219659 lncRNA downstream 34128 1399992 ~ 1400587 (-) True G148559
TU219634 lncRNA downstream 34394 1270160 ~ 1400321 (-) True G148547
TU219516 lncRNA downstream 86021 1284070 ~ 1348694 (-) False G148517
TU219555 lncRNA downstream 109942 1246448 ~ 1324773 (-) False LOC122328053
TU219453 lncRNA upstream 9822 1445261 ~ 1447360 (-) True LOC122328029
XR_006247740.1 lncRNA upstream 11081 1446520 ~ 1447336 (-) False LOC122328029
TU219533 lncRNA upstream 17217 1452656 ~ 1977860 (-) False G148517
XR_006247764.1 lncRNA upstream 23399 1458838 ~ 1460885 (-) True LOC122328049
XR_006247756.1 lncRNA upstream 57796 1493235 ~ 1497591 (-) True LOC122328042
XM_043223709.1 mRNA downstream 7413 1423876 ~ 1427302 (-) True LOC122327988
XM_043223828.1 mRNA downstream 282322 1141558 ~ 1152393 (-) True LOC122328117
XM_043223824.1 mRNA downstream 386478 1038827 ~ 1048237 (-) True LOC122328113
XM_043223599.1 mRNA downstream 404271 1022748 ~ 1030444 (-) True LOC122327917
XM_043223605.1 mRNA upstream 135037 1570476 ~ 1865956 (-) True LOC122327919
XM_043223606.1 mRNA upstream 135037 1570476 ~ 1610253 (-) False LOC122327919
XM_043223607.1 mRNA upstream 135037 1570476 ~ 1574910 (-) False LOC122327919
XM_043223717.1 mRNA upstream 144851 1580290 ~ 1582417 (-) True LOC122327995
XM_043223719.1 mRNA upstream 147576 1583015 ~ 1584544 (-) True LOC122327997
unassigned_transcript_2536 other downstream 1200 1433445 ~ 1433515 (-) True trnag-gcc_102
unassigned_transcript_2535 other downstream 1785 1432857 ~ 1432930 (-) True trnai-aau_112
TU218822 other downstream 601340 831975 ~ 833375 (-) False arl8a
TU218900 other downstream 646562 783863 ~ 788153 (-) True srsf3b
TU219681 other upstream 26434 1461873 ~ 1463176 (-) True G148573
TU219728 other upstream 148305 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 208271 1643710 ~ 1654340 (-) True G148574
TU219752 other upstream 225746 1661185 ~ 1664627 (-) True G148613
TU219884 other upstream 678899 2114338 ~ 2116183 (-) False LOC122328032

Expression Profile