RNA id: TU219774


Basic Information

Item Value
RNA id TU219774
length 1451
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G148630
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1808166 ~ 1905929 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagagacaaagacacacagagacaaagacatagagacagagacaaagacataGAGAcagtcacacagagacagacagagacaaagacacgcagagacagacagagacaaagacacgcagagacagagacaaagacataGAGACAGTCACACAGAGACcgacagagacaaagacacgcagagacagagacaaagacacacagagacagagacaaagacacacagagacaaagacatagagacagagacagtcacacagagacagagacagagacacacacacaaggagacacagagagaaaaaagaaatgagcagAAGTCCTCTGTGCACGTATGTGTACATTTCCTGTGTTTGAGTAAGACTGTGTGCAGTGTCTGACCTGCACCATGATGAGTTTACGTTCTCGGGGTCTGCCATCAGGCCACTCCTCCCCGAAACACAGATGAATGTCAAAGAGCGGAGACTCAGACGAAAGCATGCCGCGCTGGTGAGCGATCACACCTGAACACAGTTAATTAcactaatattacaaaaaagatagaataaaaaagaataaaatataataaaacaatatattatttgaaaCTCAGAAACTCACAgaattttaaggaaaaaaaaccttaaggctattattaaacataaataaaaagttgtttatGCATTCATATAATTCCACGTGCTAAACccaaaattcaatttaaaattcaacctttaaaaaaaaaaaaaaaaaaggtgagaaAAACTTCAAACggatttatataaaaactgaaatgaaagaaacagaaCTGAGGAAAGGAGCGATCACTCACCGCTGAGGAAGGACTCGAGGCAGAAGAGCTTGACCTTGTGCTGGCGCTCGATCAGGTTGGGGGTGTTGGGGTTGGGAGCGCAGGGGCCGGACCAGTACACCTTACACTGACAGAGACGCATGGCGGGCGATGTCGTGTCCGCCACCTCCAGGATGAGTCCTCGGTCCATCACGTCCAGCAGGCGGCTGGTGAACACACGCTGCTTGTCGTTAGAGATGTGCTCGGTGGAGGGGAAGCGCACCTGCTCCAGGCTCACGGGGCCAAACAGCTCCTCCTGATTGACGATGGGCCCCAGATCCCCGTAGAACAGACGACAGCCCTGAGGATTACTGACCGTCAccggaggacacacctccttcccGCGGTAGTAGAACTGCACCTCCAGGTCGGTCACTGAACACACAGCAACAAATAACTgacattaatatacattaaacatgtataaacacgttaattattattcatttgttattttttcattagtGCCATCAAATGATAAATCGCATCCAGAATGaaaaatgatgtgtgtgtgtgtgtgtgtgtgtactgggcAGGGAGCTGATCCAGGTCTCAGGCGTGGCGAACATGGCGTCCAGCGGCGTGGGCGTCTGGATCTCCATCGGGCGGCGGCTGCATCTCCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219766 lncRNA downstream 17117 1790727 ~ 1791049 (-) True G148625
TU219759 lncRNA downstream 22743 1716915 ~ 1785423 (-) True G148619
TU219588 lncRNA downstream 29394 1776875 ~ 1778772 (-) True G148532
TU219761 lncRNA downstream 72286 1729630 ~ 1735880 (-) True G148620
TU219760 lncRNA downstream 80322 1716915 ~ 1727844 (-) False G148619
TU219841 lncRNA upstream 47008 1952937 ~ 1958093 (-) True G148663
TU219872 lncRNA upstream 192288 2098217 ~ 2098937 (-) True G148687
XR_006247744.1 lncRNA upstream 208391 2114320 ~ 2116140 (-) False LOC122328032
XR_006247745.1 lncRNA upstream 208391 2114320 ~ 2115943 (-) True LOC122328032
XR_006247726.1 lncRNA upstream 223602 2129531 ~ 2132683 (-) True LOC122327838
XM_043223582.1 mRNA downstream 9481 1699898 ~ 1798685 (-) False LOC122327910
XM_043223586.1 mRNA downstream 9481 1699898 ~ 1798685 (-) False LOC122327910
XM_043223589.1 mRNA downstream 9481 1699898 ~ 1798685 (-) False LOC122327910
XM_043223584.1 mRNA downstream 9481 1699898 ~ 1798685 (-) False LOC122327910
XM_043223588.1 mRNA downstream 9481 1699898 ~ 1798685 (-) False LOC122327910
XM_043223608.1 mRNA upstream 9463 1915392 ~ 1928706 (-) True ampd2a
XM_043223833.1 mRNA upstream 53907 1959836 ~ 1963227 (-) True LOC122328124
XM_043223812.1 mRNA upstream 206852 2112781 ~ 2114243 (-) True LOC122328100
XM_043223714.1 mRNA upstream 214660 2120589 ~ 2123969 (-) True LOC122327992
XM_043222262.1 mRNA upstream 218661 2124590 ~ 2128965 (-) True aqp12
TU219752 other downstream 143539 1661185 ~ 1664627 (-) True G148613
TU219689 other downstream 153826 1643710 ~ 1654340 (-) True G148574
TU219728 other downstream 193628 1583744 ~ 1614538 (-) False LOC122327997
TU219681 other downstream 344990 1461873 ~ 1463176 (-) True G148573
unassigned_transcript_2536 other downstream 374651 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219884 other upstream 208409 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2537 other upstream 221933 2127862 ~ 2127935 (-) True trnai-aau_113
unassigned_transcript_2539 other upstream 224694 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2540 other upstream 224958 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2541 other upstream 225284 2131213 ~ 2131283 (-) True trnag-gcc_103

Expression Profile