RNA id: TU220608


Basic Information

Item Value
RNA id TU220608
length 347
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G149136
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3586059 ~ 3586849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCAGGAATAGGCGTGTCGTTCTGGGTGACCACGATGTCACCACCCATGAGGGTCGTGAACAGTACATGAGCGTCAGCCGTGTCTACATCCACCCCAACTGGAACAGCAACAGTTTGTCTTCAGGatatgaTATAGCTCTTCTTCGTCTGTCCACTGAAGCTCTGAACTCATATGTGCAGCCAGCCACCCTGCCACCTTCTGGAGAGAGGTTCTGCCCCACAACAACACCAGTTACTTCACCGGCTGGGGCCTCACATCCAGTGGTGGGTCGATCTCTGCTGAGCTGAAAGAGGCCTCTCTGTCTGTGGTCGACTACAATACCTGCACTCTTAGCGACTGGTGGG

Function

GO:

id name namespace
GO:0042594 response to starvation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247675.1 lncRNA downstream 7330 3576434 ~ 3578729 (-) True LOC122327595
TU220596 lncRNA downstream 14617 3547465 ~ 3571442 (-) True G149126
TU220591 lncRNA downstream 29231 3536141 ~ 3556828 (-) False G149123
TU220592 lncRNA downstream 41091 3544292 ~ 3544968 (-) True G149124
TU220585 lncRNA downstream 43862 3515185 ~ 3542197 (-) True G149120
TU220622 lncRNA upstream 59051 3645900 ~ 3646225 (-) False LOC122328127
TU221023 lncRNA upstream 97646 3684495 ~ 3872019 (-) True G149408
TU221029 lncRNA upstream 105308 3692157 ~ 3692921 (-) True G149411
TU221033 lncRNA upstream 133322 3720171 ~ 3721187 (-) True G149413
TU221059 lncRNA upstream 241726 3828575 ~ 3829523 (-) True G149435
XM_043222982.1 mRNA downstream 26245 3556132 ~ 3559814 (-) True LOC122327542
XM_043222855.1 mRNA downstream 153132 3424435 ~ 3432927 (-) True LOC122327463
XM_043222640.1 mRNA downstream 162505 3378322 ~ 3423554 (-) False LOC122327341
XM_043222639.1 mRNA downstream 184657 3378322 ~ 3401402 (-) True LOC122327341
XM_043222635.1 mRNA downstream 219940 3344414 ~ 3366119 (-) False si:rp71-36a1.1
XM_043223837.1 mRNA upstream 58078 3644927 ~ 3652009 (-) True LOC122328127
XM_043222665.1 mRNA upstream 143662 3730511 ~ 3735990 (-) True LOC122327357
XM_043222746.1 mRNA upstream 149292 3736141 ~ 3741922 (-) True LOC122327402
XM_043222745.1 mRNA upstream 149292 3736141 ~ 3741022 (-) False LOC122327402
XM_043222744.1 mRNA upstream 149292 3736141 ~ 3741022 (-) False LOC122327402
TU220553 other downstream 171348 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 236887 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 313008 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 705654 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 706424 2879564 ~ 2879635 (-) True trnad-guc_18
TU221027 other upstream 104651 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 569643 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 842921 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 842921 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 842946 4429795 ~ 4433500 (-) False LOC122327456

Expression Profile