RNA id: TU221033



Basic Information


Item Value
RNA id TU221033
length 613
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G149413
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3720171 ~ 3721187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACTGTatatgatgatgttcttgacgGAGATTCAGAggcagactgaagctggattaTCCAAcaggatctctgaccatcatgaacaccaCACCTGAACATACTGGATGTTTTGAACTAGAGATAAACACTTACAGCAGACCTCCCTGTGTCTCGTTGTATACGCTCGTCTGTCTGTTCCTGTCATCAGCAGAGATTGTTCTTCATCTTTTCGTCATCATCTTGTTCGTTGTTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacttacagctgtgtgatcaacaaccccatcagaaaccagaccaaACATCTGGACATCAGCAGACTCTGTCAGCCATGCTCAGACTCTGAACACTGCTGTGGTTTTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACAGTCACTATTCTTGTTTATGACATCAGATCCAGAAGAGCTCATCATATTCACAAATCAGGAAGCATTGAAATCTAAAGcagaaggaaggaaggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221029 lncRNA downstream 27250 3692157 ~ 3692921 (-) True G149411
TU220622 lncRNA downstream 73946 3645900 ~ 3646225 (-) False LOC122328127
TU220608 lncRNA downstream 133322 3586059 ~ 3586849 (-) True G149136
XR_006247675.1 lncRNA downstream 141442 3576434 ~ 3578729 (-) True LOC122327595
TU220596 lncRNA downstream 148729 3547465 ~ 3571442 (-) True G149126
TU221059 lncRNA upstream 107388 3828575 ~ 3829523 (-) True G149435
TU221065 lncRNA upstream 157592 3878779 ~ 3879910 (-) True G149441
TU221072 lncRNA upstream 207499 3928686 ~ 3929766 (-) True G149447
TU221099 lncRNA upstream 252976 3974163 ~ 4021597 (-) True G149460
TU221084 lncRNA upstream 254744 3975931 ~ 4004645 (-) False LOC122327411
XM_043223837.1 mRNA downstream 68162 3644927 ~ 3652009 (-) True LOC122328127
XM_043222982.1 mRNA downstream 160357 3556132 ~ 3559814 (-) True LOC122327542
XM_043222855.1 mRNA downstream 287244 3424435 ~ 3432927 (-) True LOC122327463
XM_043222640.1 mRNA downstream 296617 3378322 ~ 3423554 (-) False LOC122327341
XM_043222665.1 mRNA upstream 9324 3730511 ~ 3735990 (-) True LOC122327357
XM_043222746.1 mRNA upstream 14954 3736141 ~ 3741922 (-) True LOC122327402
XM_043222745.1 mRNA upstream 14954 3736141 ~ 3741022 (-) False LOC122327402
XM_043222744.1 mRNA upstream 14954 3736141 ~ 3741022 (-) False LOC122327402
XM_043223841.1 mRNA upstream 21060 3742247 ~ 3744520 (-) True LOC122328131
TU220553 other downstream 305460 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 370999 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 447120 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 839766 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 840536 2879564 ~ 2879635 (-) True trnad-guc_18
TU221146 other upstream 435305 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 708583 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 708583 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 708608 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 708614 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile