RNA id: TU221059


Basic Information

Item Value
RNA id TU221059
length 254
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G149435
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3828575 ~ 3829523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTGTTGAACTGTAGAATATAATGTCCAACATGTTTCATTGtggtgttcatgatggtcagagatccagtttgatcgtccatcttcagtctgtctctgaatctcccgtcaagaacatcatcatatAAAGTCATGATGTCAGCTGTTGCATTGATTTCAGcgattaaagtatttttaaacctCCACTGAATCTTATCATCATCCATCATTTCAGTAAAATCAGAGTTGAGAGTCACTGATTCTCCAATTTTCAC

Function

GO: NA

KEGG:

id description
ko03070 Bacterial secretion system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221033 lncRNA downstream 107388 3720171 ~ 3721187 (-) True G149413
TU221029 lncRNA downstream 135654 3692157 ~ 3692921 (-) True G149411
TU220622 lncRNA downstream 182350 3645900 ~ 3646225 (-) False LOC122328127
TU220608 lncRNA downstream 241726 3586059 ~ 3586849 (-) True G149136
XR_006247675.1 lncRNA downstream 249846 3576434 ~ 3578729 (-) True LOC122327595
TU221065 lncRNA upstream 49256 3878779 ~ 3879910 (-) True G149441
TU221072 lncRNA upstream 99163 3928686 ~ 3929766 (-) True G149447
TU221099 lncRNA upstream 144640 3974163 ~ 4021597 (-) True G149460
TU221084 lncRNA upstream 146408 3975931 ~ 4004645 (-) False LOC122327411
TU221100 lncRNA upstream 157881 3987404 ~ 4016094 (-) True G149461
XM_043223842.1 mRNA downstream 80771 3744546 ~ 3747804 (-) True LOC122328132
XM_043223841.1 mRNA downstream 84055 3742247 ~ 3744520 (-) True LOC122328131
XM_043222746.1 mRNA downstream 86653 3736141 ~ 3741922 (-) True LOC122327402
XM_043222745.1 mRNA downstream 87553 3736141 ~ 3741022 (-) False LOC122327402
XM_043222744.1 mRNA downstream 87553 3736141 ~ 3741022 (-) False LOC122327402
XM_043222991.1 mRNA upstream 54990 3884513 ~ 3887580 (-) True LOC122327546
XM_043223852.1 mRNA upstream 67460 3896983 ~ 3898464 (-) True LOC122328145
XM_043222805.1 mRNA upstream 74408 3903931 ~ 3905997 (-) True LOC122327439
XM_043223853.1 mRNA upstream 80511 3910034 ~ 3916504 (-) True LOC122328146
XM_043222755.1 mRNA upstream 112605 3942128 ~ 3951104 (-) False LOC122327408
TU220553 other downstream 413864 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 479403 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 555524 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 948170 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 948940 2879564 ~ 2879635 (-) True trnad-guc_18
TU221146 other upstream 326969 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 600247 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 600247 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 600272 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 600278 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile