RNA id: TU221099



Basic Information


Item Value
RNA id TU221099
length 868
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G149460
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3974163 ~ 4021597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tattcataaagcatttttattgtCAGAACTCTTGAAACTAGTCACAGCATGAGTTTATAAGACCATGATTTTTTAATGAGGTATGAGACATATGTCCTTgaacatgtttatatttcacaaacacatttttttagtcCCTTTATTGTGTACAGACCAAAACTGTGTCAAACTGTCAAAATTATGGgcagaaatggaaaaacaccCTTCAACCACATGCATTAAACACAGACGCGCTGCTGACACCTCAGAAACGTGCAGAGAAACTCATGAACAGACATCAAACACAAATTCAGCAGCAAGGCGCATTCTCACGCAGAAGATGTTAGCCTGCCAAACCACTCTCGACTCGTTTTGATGAACGTTTTACATTTATGGTGTCCTCGATTCATTCTAAGAGCTCGCCGTTTCACACTCGTGTCATTTGCACTCCCCTCCATTTTCAGAGTCAATAATCAACATTTCCAAGCTTCAAAAAGCGCAGAAGCTCAAAACTGGTCTGTCGGGTCTTTCCACGTCCCGAAAAGTCTTTTCGCGTCCCGATAGCAGTCGCTATGTCAAGTGTCAAGAGACAAGAGGCATGGCTTTGGAGAGTGATTAGCAGAAAGCTTTCAAAGCTAGCTTGTATGATTCTTATTCGTCGTTCATGTAAATGTGTTGCGTTGGTTGGCTTGAGAGCTCTGAGGGTGTCTAAAGAGTTGAACCAATGAAAACGTCTTTGTTTAATCATATGACGACAGATACATAGTCCACATGAGTCTCCTCTCCGATTTTCTGCAAAAAGCATGCACAATTGCGCTAAAACGGTTTGCCTTTTAAGGGTtaacacattttctttaaaatcaaatattgaaCTCAGGTAATAGAGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221072 lncRNA downstream 44397 3928686 ~ 3929766 (-) True G149447
TU221065 lncRNA downstream 94253 3878779 ~ 3879910 (-) True G149441
TU221023 lncRNA downstream 102144 3684495 ~ 3872019 (-) True G149408
TU221091 lncRNA upstream 12863 4034460 ~ 4054869 (-) True G149458
XR_006247673.1 lncRNA upstream 16405 4038002 ~ 4039415 (-) True LOC122327593
TU221092 lncRNA upstream 28283 4049880 ~ 4054869 (-) False G149458
XR_006247676.1 lncRNA upstream 32506 4054103 ~ 4055280 (-) True LOC122327596
TU221109 lncRNA upstream 39763 4061360 ~ 4063492 (-) True G149467
XM_043222755.1 mRNA downstream 23059 3942128 ~ 3951104 (-) False LOC122327408
XM_043222754.1 mRNA downstream 23074 3942128 ~ 3951089 (-) False LOC122327408
XM_043222753.1 mRNA downstream 23078 3942128 ~ 3951085 (-) False LOC122327408
XM_043222758.1 mRNA downstream 28084 3942128 ~ 3946079 (-) False LOC122327408
XM_043222756.1 mRNA downstream 28087 3942128 ~ 3946076 (-) True LOC122327408
XM_043222638.1 mRNA upstream 21061 4042658 ~ 4046708 (-) False LOC122327340
XM_043222637.1 mRNA upstream 21061 4042658 ~ 4046708 (-) True LOC122327340
XM_043222685.1 mRNA upstream 59643 4081240 ~ 4089707 (-) True LOC122327368
XM_043222965.1 mRNA upstream 138453 4160050 ~ 4171891 (-) False LOC122327533
XM_043222963.1 mRNA upstream 138453 4160050 ~ 4171891 (-) False LOC122327533
TU221027 other downstream 95447 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 559452 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 624991 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 701112 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1093758 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 134895 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 408173 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 408173 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 408198 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 408204 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile