RNA id: TU221100



Basic Information


Item Value
RNA id TU221100
length 326
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G149461
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3987404 ~ 4016094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGAAACTGAAAGAGCCCATTCAAAAGATTGTCTACAAAGACACCGCCAGAGATATGgctaatgaaattaaaacaaactgtgaATCCCTAAATGGAAACAGATCTAACCTAGAGAAACACATTCTTAGGAGGTTGGCAGAGCAGGAGGATTTTGACAAGTACATTGAATACTTAAACTTTCCCAGAGACCACTTAAAGGGTTTTGTCAAAGATGAAGTCAGTAAGTATATCACTGATAAGTTTGAAGTCAAGGTTCGACCCAAGATGAAGGAGAAAATTGAACTTGTGAAGCAGAAGATTATGGCAGCGGTTCATAGAGCAACTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221072 lncRNA downstream 57638 3928686 ~ 3929766 (-) True G149447
TU221065 lncRNA downstream 107494 3878779 ~ 3879910 (-) True G149441
TU221059 lncRNA downstream 157881 3828575 ~ 3829523 (-) True G149435
TU221033 lncRNA downstream 266217 3720171 ~ 3721187 (-) True G149413
TU221029 lncRNA downstream 294483 3692157 ~ 3692921 (-) True G149411
TU221093 lncRNA upstream 3190 4019284 ~ 4034737 (-) False G149458
TU221091 lncRNA upstream 18366 4034460 ~ 4054869 (-) True G149458
XR_006247673.1 lncRNA upstream 21908 4038002 ~ 4039415 (-) True LOC122327593
TU221092 lncRNA upstream 33786 4049880 ~ 4054869 (-) False G149458
XR_006247676.1 lncRNA upstream 38009 4054103 ~ 4055280 (-) True LOC122327596
XM_043222755.1 mRNA downstream 36300 3942128 ~ 3951104 (-) False LOC122327408
XM_043222754.1 mRNA downstream 36315 3942128 ~ 3951089 (-) False LOC122327408
XM_043222753.1 mRNA downstream 36319 3942128 ~ 3951085 (-) False LOC122327408
XM_043222758.1 mRNA downstream 41325 3942128 ~ 3946079 (-) False LOC122327408
XM_043222756.1 mRNA downstream 41328 3942128 ~ 3946076 (-) True LOC122327408
XM_043222638.1 mRNA upstream 26564 4042658 ~ 4046708 (-) False LOC122327340
XM_043222637.1 mRNA upstream 26564 4042658 ~ 4046708 (-) True LOC122327340
XM_043222685.1 mRNA upstream 65146 4081240 ~ 4089707 (-) True LOC122327368
XM_043222965.1 mRNA upstream 143956 4160050 ~ 4171891 (-) False LOC122327533
XM_043222963.1 mRNA upstream 143956 4160050 ~ 4171891 (-) False LOC122327533
TU221027 other downstream 108688 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 572693 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 638232 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 714353 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1106999 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 140398 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 413676 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 413676 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 413701 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 413707 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile