RNA id: TU221109



Basic Information


Item Value
RNA id TU221109
length 410
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G149467
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4061360 ~ 4063492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttatgttgtttttcatttggtAAGCAGAGTCCTCTGCAAGACTCGTCGCACCGCCTAAACATCGGAAAACACCAGAAAACGCGAACGATGCTTTAATTCGAATGCGAAATGTTAAATCTAAGATTCAGTTAAGTCTGTCGTCGTCGAAATAAACTACTTTCACTTTCACCTAAGCTCGGGACGTCCGTATAAAACAAAGCGTTTATATCCATGGAAACTGCACGCGTTCGATTCGTAATGGAATAGCGTCGAAAATGACGATCTCTGTTTGTGTCACGTTTGCCTTCCTCGTGGCTGGCGTAAGTTGTGTTTATAGAGATGGAGTGTCACAGACCGTGGAGGAGGGAGAATCTGTCACTCTACACACTGGGGTCGAAACAAACCAACAGCGAAAGATAAGATGGTAct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006247676.1 lncRNA downstream 6080 4054103 ~ 4055280 (-) True LOC122327596
TU221091 lncRNA downstream 6491 4034460 ~ 4054869 (-) True G149458
TU221092 lncRNA downstream 6491 4049880 ~ 4054869 (-) False G149458
XR_006247673.1 lncRNA downstream 21945 4038002 ~ 4039415 (-) True LOC122327593
TU221093 lncRNA downstream 26623 4019284 ~ 4034737 (-) False G149458
TU221122 lncRNA upstream 15875 4079367 ~ 4080049 (-) True G149474
TU221120 lncRNA upstream 16164 4079656 ~ 4080049 (-) False G149474
TU221121 lncRNA upstream 16164 4079656 ~ 4080205 (-) False G149474
TU221125 lncRNA upstream 30874 4094366 ~ 4098629 (-) True G149476
TU221128 lncRNA upstream 35919 4099411 ~ 4099703 (-) True G149478
XM_043222638.1 mRNA downstream 14652 4042658 ~ 4046708 (-) False LOC122327340
XM_043222637.1 mRNA downstream 14652 4042658 ~ 4046708 (-) True LOC122327340
XM_043222767.1 mRNA downstream 18991 4003585 ~ 4042369 (-) False LOC122327411
XM_043222766.1 mRNA downstream 54708 4002507 ~ 4006652 (-) False LOC122327411
XM_043222685.1 mRNA upstream 17748 4081240 ~ 4089707 (-) True LOC122327368
XM_043222965.1 mRNA upstream 96558 4160050 ~ 4171891 (-) False LOC122327533
XM_043222963.1 mRNA upstream 96558 4160050 ~ 4171891 (-) False LOC122327533
XM_043222966.1 mRNA upstream 96558 4160050 ~ 4168646 (-) True LOC122327533
XM_043222964.1 mRNA upstream 96558 4160050 ~ 4162982 (-) False LOC122327533
TU221027 other downstream 182644 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 646649 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 712188 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 788309 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1180955 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 93000 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 366278 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 366278 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 366303 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 366309 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile