RNA id: TU221325



Basic Information


Item Value
RNA id TU221325
length 963
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G149594
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4679919 ~ 4681076 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCTATGTTTCTTGTAGATGCAGCACATCACGGCTGAAACTAAAATCATCAAAGATCCAGCAGTGGACAAGAACAATAGTCTCACAGACATAAAGACTGGAGGATCTGAAGGAGATTGAAAGAACATCTACTCACTTTAATaggtagagagagactgatgctgagatcagacacactgatgctggacaacAAACggtttcctttgtaccaggagagagtcacatgacccacGTTCACCGCCGAACACAACAATGAACAAGATGATGATGAACATGATGAAAAGTTGCTGGTAATGTTAGGAACAGGCAGACGAACtggaaaatattacagaataaaGATGGATCACACTTATATTTGGTGTAGCGTGTTGATGGTCagtaaaattaatgtatttctgtATGTAAGTGTTTGGATTAATGTTAGTAGTTTAGTACAAGTTAGACaattcagctaaaaaaaatctgttagtGACACACAATGTAAGTCAACGGGGTcaatttataaacattatatcaACAATATgggaggaaaaacaaacaaaaaaaatgttagcaactttttttgtgtttttatacacTATAGACCACTATAGCTAAGGAAATATTAGTTTAGATTTGTAATGCGTCACTGTAAAGTTGTGTTGGGCAGTACGCCataaatgctgcaaaataagaataagaacGTTACAAATTATCAGTATACTTACTGTAGACAGAAacactaaatgtttttgatgacCACTTGACTTTACTTATCTCTACTTTATAAACTCCAGCGTGTTGAGTCGTGATGTTCATGATGGTGAGAGATCCAGTTTGATCcatcttcagtctgtctctgaatctcccatCAGAGCCATCATATGTGGAGAAGATTCCAGTAGCTTTATTGATTTCAGCTATGAGAGACGTTTCAGCTCCAAATTTCCACAGTATATCATCATGTTCCTGTATTTCGGTAACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221329 lncRNA downstream 8149 4662075 ~ 4671770 (-) True G149598
TU221323 lncRNA downstream 54014 4625597 ~ 4625905 (-) True G149592
TU221317 lncRNA downstream 65034 4614307 ~ 4614885 (-) True G149587
TU221316 lncRNA downstream 68646 4610930 ~ 4611273 (-) True G149586
TU221275 lncRNA downstream 135176 4537838 ~ 4544743 (-) False G149568
TU221344 lncRNA upstream 31972 4713048 ~ 4724631 (-) True LOC122327545
TU221346 lncRNA upstream 33089 4714165 ~ 4723288 (-) False LOC122327545
TU221918 lncRNA upstream 251373 4932449 ~ 5041927 (-) True G149955
TU221917 lncRNA upstream 252931 4934007 ~ 5037555 (-) False G149955
TU221919 lncRNA upstream 258359 4939435 ~ 4939839 (-) True G149956
XM_043222731.1 mRNA downstream 1202 4649573 ~ 4678717 (-) False LOC122327393
XM_043222730.1 mRNA downstream 1202 4672345 ~ 4678717 (-) True LOC122327393
XM_043222732.1 mRNA downstream 1202 4674112 ~ 4678717 (-) False LOC122327393
XM_043222729.1 mRNA downstream 18508 4649573 ~ 4661411 (-) False LOC122327393
XM_043222802.1 mRNA downstream 44692 4628572 ~ 4635227 (-) False LOC122327436
XM_043222646.1 mRNA upstream 10018 4691094 ~ 4697295 (-) False LOC122327345
XM_043222645.1 mRNA upstream 10018 4691094 ~ 4697294 (-) True LOC122327345
XM_043222788.1 mRNA upstream 20887 4701963 ~ 4705365 (-) True LOC122327429
XM_043222789.1 mRNA upstream 21782 4702858 ~ 4705859 (-) False LOC122327429
XM_043222787.1 mRNA upstream 21782 4702858 ~ 4705859 (-) False LOC122327429
TU221294 other downstream 91497 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 193576 4482821 ~ 4486343 (-) True LOC122327455
XR_006247645.1 other downstream 246419 4429801 ~ 4433500 (-) False LOC122327456
XR_006247647.1 other upstream 35662 4716738 ~ 4736860 (-) False LOC122327545
XR_006247637.1 other upstream 464850 5145926 ~ 5153856 (-) True LOC122327354
XR_006247634.1 other upstream 846481 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 857480 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 857485 5538561 ~ 5542059 (-) False bloc1s1

Expression Profile