RNA id: XR_006247647.1


Basic Information

Item Value
RNA id XR_006247647.1
length 1469
RNA type transcript
GC content 0.43
exon number 9
gene id LOC122327545
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4707874 ~ 4736860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cGGGCAGCAGCAGAAGAATAAAGTAAAGCTTTAAaccgtttatttatttctttattagaCGTGCATTAGGACCAACGGGATTAACAGAAACCCTAGAAGATGAGTGATGCAGGACACTTCACAGTAAAGCAAGAAGATGCTGAAGAACAAAGAGCACATCACGACCGAAGCTACAATCAAAAAGGATCCAGAAGCAGTAATCAGCCCTTTAGGAAATAAAGAAGCAGCACGTCACAACTGTAGCCGCAATCAACAGAGATCCAGCAGCAGCGGAATCAGCAGAACGTAAAACAAGGgagagagtcacatgacccacGTTCACCGCCAAACACAACAACGAACAAGATGACGATGGTGATGACGATAAACTATTCGGTGAAGAATCTCTGGTAATGTTGGGAGTGGGCAGACGAGCtggaaaacatgaaaataaaccacaaatatGGACGCGGTTTGaggaaaatgaatgttttgtggAATTTCTCTGTTTTCGTCGTGCTTGTTGGTTTTTATGTTGTCGGTGTAGATGAAGTGTCGGTGaaggagggagattcagtcacaCTACCCACTGATGTTACAGCAGACCAGCATGAAACCAttaaatggtttgttaatgACACTAGAATCGCTGAAATCAGTACAGATGTGAGATGTACAGATGTTCAGTGTAATAAAGGCAccgagagattcagagacagactggagCTGGATCctcagactggatctctgaccatcacgaacaccagaaccacagactctggactttatCTTCTAGAGTTCATCAGCGTTGGCAGACACCGTGAAAAGACCTTCAACGTTACAGTTCAGGgtgttcCTGCCTCCGAACGAGATGAAATTAAGGGAACATCAGTGAAGAAGGAACAATCTGGTATAGTGAATATAGTACATACTGGTATAGTGATAGCATGGCATTTTAATAGGTCTCTCTGATCTTAACATGCAGGTCAGAGTCACAGATCTTATACTGTATGTCAGTCGCATGCTGTTCCCATGTCTaatctacataaaaaaatgcataacatttgacattttctttctcagctCAGTGCTGTTTTAACCTAATAAAACAGTCCTTACCAGGTGCCACCATTAAGTTAAATCGGTATCATACAACTGATGACCAAAGTAGACGGATATTGTTGAGTACTGATTGGATTATAAGATTCAGATGTTTTTCAGGTCTGTCTTCAGCTGAAGTAGGAGGAATTGTTGCTGGTGTCCTGTTATTTGCCGCCGCCGTTTTTGGTGTTGTTTATTATCACAAGTGTCATCAAAGAGGGCAATATAGATCAGGAATCAAGACGTGATCAGGCATCACTTCATTGACCCGCTGAGCTTTTTATCTGGACACTGGTCTCTCATCAGCCTCTCATCTTCCGCTTCCAGTGGGCCTCAGCGCTGCGAAAGTCTGTATTTCTTTGAGACACTGAGAAGATGAGGTAGtgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221325 lncRNA downstream 35662 4679919 ~ 4681076 (-) True G149594
TU221329 lncRNA downstream 44968 4662075 ~ 4671770 (-) True G149598
TU221323 lncRNA downstream 90833 4625597 ~ 4625905 (-) True G149592
TU221317 lncRNA downstream 101853 4614307 ~ 4614885 (-) True G149587
TU221316 lncRNA downstream 105465 4610930 ~ 4611273 (-) True G149586
TU221918 lncRNA upstream 195589 4932449 ~ 5041927 (-) True G149955
TU221917 lncRNA upstream 197147 4934007 ~ 5037555 (-) False G149955
TU221919 lncRNA upstream 202575 4939435 ~ 4939839 (-) True G149956
TU221923 lncRNA upstream 220541 4957401 ~ 4965758 (-) True LOC122327586
XR_006247662.1 lncRNA upstream 220699 4957559 ~ 4965773 (-) False LOC122327586
XM_043222987.1 mRNA downstream 4607 4707874 ~ 4712131 (-) False LOC122327545
XM_043222789.1 mRNA downstream 10879 4702858 ~ 4705859 (-) False LOC122327429
XM_043222787.1 mRNA downstream 10879 4702858 ~ 4705859 (-) False LOC122327429
XM_043222788.1 mRNA downstream 11373 4701963 ~ 4705365 (-) True LOC122327429
XM_043222646.1 mRNA downstream 19443 4691094 ~ 4697295 (-) False LOC122327345
XM_043222602.1 mRNA upstream 1522 4738382 ~ 4745957 (-) True LOC122327323
XM_043222653.1 mRNA upstream 13381 4750241 ~ 4757432 (-) True LOC122327350
XM_043223866.1 mRNA upstream 23170 4760030 ~ 4767528 (-) True LOC122328160
XM_043222976.1 mRNA upstream 33718 4770578 ~ 4772743 (-) True LOC122327538
XM_043222770.1 mRNA upstream 36947 4773807 ~ 4777213 (-) True gpd1b
TU221294 other downstream 128316 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 230395 4482821 ~ 4486343 (-) True LOC122327455
XR_006247642.1 other downstream 283238 4429795 ~ 4433500 (-) False LOC122327456
XR_006247637.1 other upstream 409066 5145926 ~ 5153856 (-) True LOC122327354
XR_006247634.1 other upstream 790697 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 801696 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 801701 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 907553 5644413 ~ 5652158 (-) False nisch

Expression Profile