RNA id: TU221918


Basic Information

Item Value
RNA id TU221918
length 1381
lncRNA type sense_over
GC content 0.47
exon number 7
gene id G149955
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4932449 ~ 5041927 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatattataatgatGATATGATCTGTGAGGAATTGCACTTACGCCACTAATCCAGCTGGAGTAGGCAGACACACGGGTGAAGACTGTTGGCTTCTTGTAGGCGTTACAACCCGATGAAGACACAAAGCTGGTTACACCATGGACGACATACTGACCACTGACCTGACAGTTCAGAGGGCCACCAGAGTCACCCTGAAACTGGCATCCAGAGTCGTTTCCGCCGCCACCGCAAACCATGGTGTTCTTCACGGTGCTTCCCCACCAGTCGCTACGAGAGCAGGTACTGTAGTCCACTGCGGGCAGATAGGCCTGTTTCAGCTGAGCCGAGAGCGACCCACCAGGATGTGCGGCCCCAGCCGGTGATGTAACAAGGGTTGTTGTGGGGCAGAACCTGTCCAGAAGGTGGCAGGGCGGCCAGCTGTACATAAGAGTTCAGAGAGGCGCTGGAGGACAGGCGCAGAAGGGCAATATCATCCCAGAAGCCACACTGTTGCTGTTCCAGTTGGGGTGGATGTAGACGTTGCTGACGCTCATGTACTGCTCGCGACCCTCGTGGTTGTAGATGTCGTGGTCGCCCAGGACAACACGCCAAGTCCTCGAGCTGCACCGGAAACACATTCAAGTGAACAGGGGTAAAGTCAGGAAACAAGCGTACATTTTTCGATGCATTACGTTTTGTCTGCATAGAGTTTTTGCTAAAGGCGCGAAATTTCCAGTCATTTTTCTCAAGTCATTCTTAAATTGTTTCAGAAACTAACAGTGTCGGTTCAGTTCAGTAACTGTGTAAAGTGACtcacaatttgtattttatttcttacaattCTTCAGACAAAATTGCAGGATCAGGATGGTGagagaaaaaacatgaatttcaaaaatatcaactcacaatataaaattgcattgttatcttgcaattctgagaaattctgagatgggtttttgtttttaactataTAGTCTATATACAAACAAACTTTCATTACGTGTCAACGCAGTGGGCAGCAGTCATCACCCAGTTAGTTCTGATCAGAGTGCCGCCACAGGTATGATAGTAGCTGCCGCCAGACAGGTACTGGAGAGAGATCTGCCAAGAGTTGGGTCTTGCCACCTCTCCACCAACAACCCTCTGTTCAGGGCCCTCCTCCAGATACCTGGGCTCAGCCAGCGCTGAATATGAAAAACATACTTAGCGATGCATTTCGTCCACATATACTAAGTTCTGAGTATTGCGTGCATTTgataaatgaactaaatctaAGCTAaacgcaaatgttttttttcagtagaaacAGATGGACGTCTCACCCAAGGCGGCCAGCACGCTCAACAACAGGATCCTCAGCATGTTTGCAGTCTGTCTGGACTTTCTGCACTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221344 lncRNA downstream 207818 4713048 ~ 4724631 (-) True LOC122327545
TU221346 lncRNA downstream 209161 4714165 ~ 4723288 (-) False LOC122327545
TU221325 lncRNA downstream 251373 4679919 ~ 4681076 (-) True G149594
TU221329 lncRNA downstream 260679 4662075 ~ 4671770 (-) True G149598
TU221323 lncRNA downstream 306544 4625597 ~ 4625905 (-) True G149592
TU221975 lncRNA upstream 99320 5141247 ~ 5142179 (-) True G150000
XR_006247653.1 lncRNA upstream 119445 5161372 ~ 5167342 (-) True LOC122327581
TU221955 lncRNA upstream 119468 5161395 ~ 5166906 (-) False LOC122327581
TU221956 lncRNA upstream 119517 5161444 ~ 5166985 (-) False LOC122327581
TU221957 lncRNA upstream 119517 5161444 ~ 5166906 (-) False LOC122327581
XM_043222641.1 mRNA downstream 101950 4790547 ~ 4830499 (-) True asic1b
XM_043222651.1 mRNA downstream 147234 4777983 ~ 4785215 (-) True smarcd1
XM_043222770.1 mRNA downstream 155236 4773807 ~ 4777213 (-) True gpd1b
XM_043222976.1 mRNA downstream 159706 4770578 ~ 4772743 (-) True LOC122327538
XM_043223866.1 mRNA downstream 164921 4760030 ~ 4767528 (-) True LOC122328160
XM_043222906.1 mRNA upstream 18271 5060198 ~ 5071072 (-) True LOC122327494
XM_043222905.1 mRNA upstream 25169 5067096 ~ 5071072 (-) False LOC122327494
XM_043222904.1 mRNA upstream 25169 5067096 ~ 5071070 (-) False LOC122327494
XM_043222903.1 mRNA upstream 25169 5067096 ~ 5071070 (-) False LOC122327494
XM_043222950.1 mRNA upstream 42913 5084840 ~ 5086512 (-) True LOC122327526
XR_006247647.1 other downstream 195589 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 344027 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 446106 4482821 ~ 4486343 (-) True LOC122327455
XR_006247645.1 other downstream 498949 4429801 ~ 4433500 (-) False LOC122327456
XR_006247637.1 other upstream 103999 5145926 ~ 5153856 (-) True LOC122327354
XR_006247634.1 other upstream 485630 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 496629 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 496634 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 602486 5644413 ~ 5652158 (-) False nisch

Expression Profile