RNA id: TU222005


Basic Information

Item Value
RNA id TU222005
length 2429
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G150017
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5201322 ~ 5204007 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaATGGTGGTGGTGAAAGagatttttctcaaaatatattctcTAGCGTTTCCACAGAACAAAAAGGaacatatttaacaaaaaagacaGCACAAATGCTTTCATTAAACAGATTTATTTGAATGCAAACGTGACCAAGTAGAACATGCAAAGAAAGCAACCAACAATCGAGGAGCTTTTCTTGATGTCCAAATCAGCATGGTTATCTGCAGGCATGGCCACTGGTGGTGCAAGACTTGGTCTAGTAGGATACTGATCATCAGCACATATTTGCTGAAACAATCAGTCCGCACATTTACTTTACGTGGAGCTGTACAATCACGTCCGCAGATAGTTCTGCAGCATTTCGTATCGCCCGTACAGTCAGTGTCATCAACACACGACTTTTTACACATTCCTACACTGAGGAACCTCCTCGGACACACTCCTGGCTTTTCTGTTACAAACACACAACGGGAACACCAGATCACTGAATGacttacatttagtcattttgccgACGCTTTTAtacaaagcgacttacaattgagactTGCACTGCATGTGAAGacataaatatcatttaaataccTTTATATGGAGGCATACACCGACTTCCGCATCCATCAGTGCAGCACTTTTTATCATCTGGACAGTTACCGTCCTGGGAACAGAGATTCTGGCTCCAAATACAACGTATGAGGCCATTGCTTGGACACACTCCTGGCTTTTCTAGTGTATAAACACGTGATAGAGAAACCAGATCACTAAACCAACAGCATCTCCACTAACACCACGACCACCAAcaaacctaaataaataaataatataataataaaaacctttatatGGAGGCACACACTGATGTCCACAACCATTGCTGCAGCATTTCTGATCTTTCAGACAGTCACTGTCACGGGAACACATCTCGGCACACACTCCTAACCTTGCCTCTGCAAGATCGCTTTCTGGGCATATCCCCGGCTTTGCTGATGTACAAAACACATATTAACTGCTGTTATGCAATCAAATAATTAGTCCCTATGAGGTTCCCTATGATCACGAGCCAAAGAAACACTGTTGGGTAGGATGCCGTTGAGCACCATTTTGGTTGAATTAATATGACACCACTTATGAAGCTACATTTCAAAGGGGtattaattagcatttaaaaagtaGCGCTTTAGCCTTTAGACTGTTTGCACAAGTGGCTTTTAAGGTAATACTTCAATAATATTGTAAGTTATAATTAGCTCCGATGTTAAGTTGAATAATGTAGTTAAACAGTAGCGATGGCATACATACCTAGTAACGACTCTTTATCCAAATCAGTGTctcctaaaaaataaataaatacataaacaatgcTCATCTTTGTCATCGCGTTTTTCTCGTACTATGGAAAACTATAAACACATAACTCGTCATTTAGGCTAGTAACTTCGTATACGTTCTGACATCTGCCTCAGGTCAAATTTTGTATgggtttttgttcaaatattttctttacgCCAATGAAGTTAAAAGACCTCACCCGTGACAGGTCCCTTGGCGAGACACAACACGAGAGCAATCAGCGAGCAGGACACCCGTGCTGCCATCCTCTCAACCTGCTTGTAGGTCAGGAGGGTTTTGAAATGCTTCGCGAAATCGCGTTTTTAAAGATCCAAGGAGGTCTGACGCAACTCCAACGCTGAAACGCAATTGCCCGTAGGCCAGTGACCTCATATTTAAGTCCCCGATTAACTTGTTTAGGTGTGTTTAGGTGCTTTCCAGCCATATCACAATTACCGTGATTGCAAAATAATGACTTGACCAACCTCCCGTATCGGCCCGGTTTCATTAGACAGGGCATAGCCTAAACCAGTATTATACCGTAGTTCAATTAGGACGTTTAAAGAATTTCTTATGAACATACCTTAAAAAATAGCATCACTGGTATGCatcaagacaaaacaaagacaccGTCATATTttagatcagtcagtgcaagtttgaaaccgttgaaacagctcagatttacattttagtctaggactatgCTTAAGCCTCGTCTGTAAAACGGTTAATTacgatttgtgtgtgtgtgctttcattCAGCGTTTTAAACGGGAGGATGAGGAAGTGAAAGGTGTTGAAATTAAATTGTCGGTTAAAACTTTCCCCATTAATCATCTTCCagcatataaaacataatttgtaaATTTTTCCTGttcttctactttttttttttttttttactgtgtttaaaatgctgttcatAACGTTTTATGTAAGTATGTAGTATTGCTAATAGTATATTTGTATGTAGAGCATAGAactattgatatatttaaaatgttttactatttaaaaatggaaactGTTCCAAGTGTATTTTACCAAATATTACTGTACACTTCTTTATACTTAGCCACAAGCCTTCCAAATACCCAAAGAACTTGATTTCC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221992 lncRNA downstream 20070 5177689 ~ 5181252 (-) True G150008
XR_006247653.1 lncRNA downstream 33980 5161372 ~ 5167342 (-) True LOC122327581
TU221956 lncRNA downstream 34337 5161444 ~ 5166985 (-) False LOC122327581
TU221955 lncRNA downstream 34416 5161395 ~ 5166906 (-) False LOC122327581
TU221957 lncRNA downstream 34416 5161444 ~ 5166906 (-) False LOC122327581
TU222016 lncRNA upstream 14828 5218835 ~ 5226874 (-) True G150025
TU222031 lncRNA upstream 28164 5232171 ~ 5235460 (-) True G150033
TU222064 lncRNA upstream 69550 5273557 ~ 5276742 (-) True G150060
TU222076 lncRNA upstream 98853 5302860 ~ 5303238 (-) True G150071
XR_006247691.1 lncRNA upstream 104243 5308250 ~ 5309890 (-) True LOC122327610
XM_043222918.1 mRNA downstream 17036 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA downstream 17036 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA downstream 17036 5182941 ~ 5184286 (-) True LOC122327503
XM_043222657.1 mRNA downstream 47466 5147883 ~ 5153856 (-) False LOC122327354
XM_043222659.1 mRNA downstream 47466 5147883 ~ 5153856 (-) False LOC122327354
XM_043222909.1 mRNA upstream 75471 5279478 ~ 5280923 (-) True LOC122327497
XM_043222587.1 mRNA upstream 123279 5327286 ~ 5341934 (-) False LOC122327315
XM_043222585.1 mRNA upstream 123279 5327286 ~ 5341934 (-) False LOC122327315
XM_043222586.1 mRNA upstream 123279 5327286 ~ 5341934 (-) True LOC122327315
XM_043222576.1 mRNA upstream 132717 5336724 ~ 5350466 (-) True LOC122327308
XR_006247637.1 other downstream 47466 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 464462 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 612900 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 714979 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 767822 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 323550 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 334549 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 334554 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 440406 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 655340 5859347 ~ 5861317 (-) False timm13

Expression Profile