RNA id: TU222016


Basic Information

Item Value
RNA id TU222016
length 2118
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G150025
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5218835 ~ 5226874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTCTCTAATTTGCTTGTACTATTCTCCAGTCCAGTGCAAAGCTGCTTTACTCCTGAATCCTCAAGATTATTATTGCTCATATTCAGCTCTATCAGTTTGTTATCTGATCCAAGAGCTTTAGCCAAATTTGAACAGCTCTTATCTGTTAAGCCACAATCATTTAGCCTAAAACCCCCCCcccacaaaatataaaatattaatgagtAAAACTGTCGTATTGCTCAATTTAAGTTAATGATTAAGAACTATAGAGATATCTTGATGCAAAAACATGACTTGTATTACTTACAGAGCTCTTTTGGAGTTTTTTAAAACTTCTAATAGCCTAAAGAGACACTCGTCTGATTTCTTGAAATTCTGAAGCTCAAACTCCTCCATCTCTTCCTCTGATGTTAACAAAACAAAGGCCACAGCAGACCATTGTGCAGGTGAAAGATCAGCAGATGAAAGACTTCCTTCTCTAAGTTGAGTCTGAATCTCTTTCACCAGAGTTTGATCATTTAGTTCATTCAGACAGTAGAACAAATTGATGGATCTCTCTGGAGATAGATTATCCTCTAGTTTCTGCTTGATGTACTGAACTATTTCCTTTTCGCTCTGGTCattgtcatcttttttttttaacagaccTTGTAAGAGTGGACGATTGATCTGGAGTGATAAACCAAGAAGGAAGCGAAGGAAAAGGTCCAGGTGACCAGTTTCACTCTCGAGTGCTTTGTCCACTGCAGTCTTGAGCAAATCAATCatggttttatttctgttttcttgttCTGTAgactcacaaacaaacacacttttctCGTTGATGTCTAGAAACAGATGTGCATAAAGGGCTGCAACAAACTCTTGAATGCTCAAGTGAACGAAGCAGAAAGTGGTACCAAGAATTATTCCTCTTTCCTCCTTAAAGATCTGATTACACATCCCTGAGTACACCGATGCCTTATCTGCATCAATACCACAGTCTTCCAGATCTTTGTCATAAAAGAGCAGATTATTTCTTTGCAACTGATGAAATGCCAGTTTACCCAGAGAAAGCATGGCATTTTTATCCCAAGAAACATCTGGTGTATATTTTCCTTCATACTTTCGTCTACTCTGCAGGATCTGAAAgcgaaaaaaatgtgtgtacatttgtgtCAGAGTCTTGGGAGTGTCTTCAATGTTTGATtcctgctgtgttttggatgcGTCAttagtttgattgtttttgagatcatttattttctcctcCAAAATGTTCTGGAGAACAGTGGCTGaaatccagcagaagactgggatgtAGCACATGATAAAAAGACTCTTTGATTGTTTAACATTATCAATAATTTTGTTGGCCAGATCCACATCTGTGAATCTTTTTCTGAAGTACTCCACTTTTTGTGCATCATTAAAACCTTGTACTTCAGTGACGCGGTCAATACAATCGGGAGGAATTTTAATGGCAGCTGCTGGTCTGGTGGTGATCCAGATCTTTGCAGAAGGAAGCAGATTTCCCTTGATGAGGTTTGTGAGGAGAACATCCAGTGAGACTGGTAAAGATACATCACGGCAAGTCTCATTACTCTCAAAGTTCAGAGGAAGACGACATTCATCCAAACCATCAAGGATGAACAGTAATGTAAATTTATCACTTCTTGAAAGGTTCAGACCTTTTATCTCTGGGAAAAACTGACGTATAAGACCTGTCAAGCTTTGGGTTTCTTTCTCCTTTAAGTTCATTTCTCTAAAAGCAAGAGGaaatatgaaagtaaaatcCTCATTTTCTTTACCGTCAGCCCAATCCACAATAAACTTTTGCACAGAGATGGATTTTCCGATGCCAGCAACTCCTTTTGTCATTacagttctgATCTGCTTCTCTTGTTCAGGTGCTTCAAACAAATTTTTGCATTCAACTGGAATCTCTTCTGATTCATGACGCCTGTCAGCATTCTGAACATGTATTACTTCATGTTTTGTATTGACTTGTTTACTAACACCCAGTGTCATGTAAAGACCTGTGtagattttattcaaaagcttGGAGTCACCATGCTTCGCAATTCCTTCAGATACCGATTCATGCTTCTTCTTCAGGTTTGATTTTAGTGGTCGCTGATGAATGAGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222005 lncRNA downstream 14828 5201322 ~ 5204007 (-) True G150017
TU221992 lncRNA downstream 37583 5177689 ~ 5181252 (-) True G150008
XR_006247653.1 lncRNA downstream 51493 5161372 ~ 5167342 (-) True LOC122327581
TU222031 lncRNA upstream 5297 5232171 ~ 5235460 (-) True G150033
TU222064 lncRNA upstream 46683 5273557 ~ 5276742 (-) True G150060
TU222076 lncRNA upstream 75986 5302860 ~ 5303238 (-) True G150071
XR_006247691.1 lncRNA upstream 81376 5308250 ~ 5309890 (-) True LOC122327610
TU222098 lncRNA upstream 191582 5418456 ~ 5425539 (-) False G150086
XM_043222918.1 mRNA downstream 34549 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA downstream 34549 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA downstream 34549 5182941 ~ 5184286 (-) True LOC122327503
XM_043222657.1 mRNA downstream 64979 5147883 ~ 5153856 (-) False LOC122327354
XM_043222909.1 mRNA upstream 52604 5279478 ~ 5280923 (-) True LOC122327497
XM_043222587.1 mRNA upstream 100412 5327286 ~ 5341934 (-) False LOC122327315
XM_043222585.1 mRNA upstream 100412 5327286 ~ 5341934 (-) False LOC122327315
XM_043222586.1 mRNA upstream 100412 5327286 ~ 5341934 (-) True LOC122327315
XM_043222576.1 mRNA upstream 109850 5336724 ~ 5350466 (-) True LOC122327308
XR_006247637.1 other downstream 64979 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 481975 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 630413 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 732492 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 785335 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 300683 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 311682 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 311687 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 417539 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 632473 5859347 ~ 5861317 (-) False timm13

Expression Profile