RNA id: TU222064


Basic Information

Item Value
RNA id TU222064
length 1507
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G150060
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5273557 ~ 5276742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACTCACCACTAACTGCAATACGAAATTTCTTATGTAAGGCCGTGCTGCTGTTGTAGATCTCCAAATCATAGTCTCCAGAGTGTTCGGTTTGGACGTTTCTGATGGTGAGGTCGCCAGTGTTTACATTTAGTTTGATCATGTCTTTCCATTTAGCATCAGCATCGCCATTTAATCCAGCAATGATGGTGCCTCGATCTCCAAACTTCCACAGTATCTGAtcatctttttgtattttagtaacACCAGTCTGTAGAGTGACAGTATCTCCCTCCATCAGTGACACTGACTGCACTTCATCTGTCACAGCAACAAATACAAGATTAAGTTAAGAGTGCTTTTAGTGATTACCACACTTGTACAAATACTTGTTAGTAAATCACTAAAAATTACGGTACTGTGCGGCTGGATTGCAGGCTATTAACCCTCTCTTCTTACCTATTTGTCTTCTGAAATGGCTttttcaacaagaaaaaaaaaaaaaaaaaaaatcaaagaaaccaaccaaaaaaatccaaaaagtaGGTAGTGCCACAATTAGTTCAGGTacttttaaaacagttaaaagttAGTTTTAAAGTTCTATTCTGCCTGATAGTATCGTATTACAATTTTTCTGTTACAATTTCTGCTCAGAATAAGCACACTGTAGTCTGAATGTCTTCGccatttgctgtttttattgtttaacaatttatttcacAGGGGAAAAATCCAAATGAACCTATAAAGGTGACACCTGATCATTTCAAACAAGCACGGGTGCACCAAGCGATTTCTGAGAAACACTGACTATAGTCTTAATTGaactaaattaattcattaacacCTCCGTTGCTCCTCCCCCAAAATGCACtgtcttaaatataaattgaaaaacaaaatagttaAAAAGAGTTTTCACACAAGCTCCAGACACATGAGACTCTATACTTACCTATTTATAACCAAGGTTGGGCAGTAACTAGTTACAGTAACAATTACTTTTTGCAGTAATTGCAGTGTAACTTCTTACTAATAAAATTTCCGTAATAATTTTGCTGTTACTATCCCTAAACCACTAGCTCATTACCTAGTTACCTTTACTAGTTACATCATCTCCTACTGATTTGAAATCCAATAAAacctatatttattttcataacttaAGTTATGGCATTCGTTTTCTCTGGCGTTGCTCACCTTTATCCCTCCGATCCAgatataaattgtatttgacGATGAAACATCTTCCTATATACTTATGTGATtgatttttgataaaaatacatcatgAATTATAATCGTATATGGTAAACAGAAAAATGATAGCTACACAATTCATTGAAATAATACAACACTTTTTCTTAAACGTCTCTATCAGTTAAGCGTTTTCAATAACTTCTAAAATGTTCTAAGAATATATGTCTGCCTTGTCATTTGGCCAAAATTAACATAGGATCGCCGTTTGTaggaaatatacataaatacagcttttctgaaagaaaagtaaaagtgctttgtttaca

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222031 lncRNA downstream 38097 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 46683 5218835 ~ 5226874 (-) True G150025
TU222005 lncRNA downstream 69550 5201322 ~ 5204007 (-) True G150017
TU221992 lncRNA downstream 92305 5177689 ~ 5181252 (-) True G150008
TU221956 lncRNA downstream 106572 5161444 ~ 5166985 (-) False LOC122327581
TU222076 lncRNA upstream 26118 5302860 ~ 5303238 (-) True G150071
XR_006247691.1 lncRNA upstream 31508 5308250 ~ 5309890 (-) True LOC122327610
TU222098 lncRNA upstream 141714 5418456 ~ 5425539 (-) False G150086
TU222105 lncRNA upstream 141714 5418456 ~ 5470508 (-) False G150086
TU222099 lncRNA upstream 151455 5428197 ~ 5428769 (-) False G150086
XM_043222918.1 mRNA downstream 89271 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA downstream 89271 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA downstream 89271 5182941 ~ 5184286 (-) True LOC122327503
XM_043222657.1 mRNA downstream 119701 5147883 ~ 5153856 (-) False LOC122327354
XM_043222909.1 mRNA upstream 2736 5279478 ~ 5280923 (-) True LOC122327497
XM_043222587.1 mRNA upstream 50544 5327286 ~ 5341934 (-) False LOC122327315
XM_043222585.1 mRNA upstream 50544 5327286 ~ 5341934 (-) False LOC122327315
XM_043222586.1 mRNA upstream 50544 5327286 ~ 5341934 (-) True LOC122327315
XM_043222576.1 mRNA upstream 59982 5336724 ~ 5350466 (-) True LOC122327308
XR_006247637.1 other downstream 119701 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 536697 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 685135 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 787214 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 840057 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 250815 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 261814 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 261819 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 367671 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 582605 5859347 ~ 5861317 (-) False timm13

Expression Profile