RNA id: TU222101


Basic Information

Item Value
RNA id TU222101
length 1325
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G150086
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5418456 ~ 5470508 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGACATGCGTGACAGAGTTGTGTGATGTTGATGTTTTGTtgagtctggtttctgatggggttgttgatcacacagctgtagatGTTTTTCTCCTGAtgttccacctccagaggtagagagagactgatgctgagatcagacacactgatgctggacaataaactgtttcctttgtaccaggagagagtcacatgactcaCGTTCACCACCGAACACAGCAGCGAACATCTGGACACTGATGAACGtttagatgatgatgatgatgaagaacagTTTGAAGTGTCTCTGATTATGACAGGTATGGGAAGAGGAGCTAGGAATATTGAGAatggaattttttatttttaacagattaAATGAGGACAAAATTGAAGAAGTGGTATTCTGTGTTTACaatctcattctgatggcacccattaaCTGCAGAGAATTCAAGCAATCTAATGCATAATTTCTTAAAATCGCTCCcaataaaataatgagaaaaaaaaacaatcctccACCTCTTGGCCTGAGAAAGAGTAaagattttttcatatttttaataaataatatatttttaaggcaCTGGTGTCTGTGTATAATGTGGTTAGCCTTAATAATATTCTGAATACAGCACAGATGAACCATTAATGGTGCAAATATGAActtcttaaataaaatatttattctaaagAACAATTCCGATCATTTAACATCACTTTTATTTCTTGGtattattaaacatgtaatATTACTCACCATAGACAGCAACAGAAAAACTCTTATAAGTGACCCCTCCTTTGATGATCTGTAGTTTATAAAGTCCAGAGTGTTGGGTTCTGATGtttctgatggtcagagatccagtctgacTGTCCATCTGCAGTCTGTCTCCAAATATATGAGTACTATCCTCTATATGGATGTTCTGTCTGTAGATTTCAGCGATACGAGCGTctgaattattaacattaaacatcCACAGTATCTGATAGTTACTCTGTACTTCAGAGACACCAGTTTTTAGAGTGACAGAGTCTCCCTCAGTCACCGACTTCTCTTCATCTGCATCACCAAGAACACCTGGAACAGACaagtattgttttattcatttatccagttttagaaaaaaatcctCTGAAAAAGACTTATTGACCAACAAGTTGTTTATTCCATTAAAaggtatatttttttgttccagATAATAAAACAGGCCtatataaagttattgtgtaaaaagataaaaactgtaatgaaacattacttaataataaaatatgtgtatCACTTACCGGGTGAGAACCAAATCCATAGGCAGAGGAAAAAAGATTTATGAATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222099 lncRNA downstream 12774 5428197 ~ 5428769 (-) False G150086
TU222098 lncRNA downstream 16004 5418456 ~ 5425539 (-) False G150086
XR_006247691.1 lncRNA downstream 131653 5308250 ~ 5309890 (-) True LOC122327610
TU222076 lncRNA downstream 138305 5302860 ~ 5303238 (-) True G150071
TU222064 lncRNA downstream 164801 5273557 ~ 5276742 (-) True G150060
TU222122 lncRNA upstream 3960 5451436 ~ 5454332 (-) True G150093
TU222121 lncRNA upstream 50465 5497941 ~ 5506152 (-) True G150092
TU222166 lncRNA upstream 61094 5508570 ~ 5512967 (-) True G150121
TU222216 lncRNA upstream 97792 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 131994 5579470 ~ 5583041 (-) True G150125
XM_043222709.1 mRNA downstream 7400 5430855 ~ 5434143 (-) True LOC122327381
XM_043222696.1 mRNA downstream 62656 5373452 ~ 5378887 (-) True LOC122327375
XM_043222560.1 mRNA downstream 67735 5364636 ~ 5373808 (-) False LOC122327304
XM_043222558.1 mRNA downstream 68819 5364636 ~ 5372724 (-) False LOC122327304
XM_043222561.1 mRNA downstream 68819 5364637 ~ 5372724 (-) False LOC122327304
XM_043223875.1 mRNA upstream 24460 5471936 ~ 5480859 (-) True LOC122328170
XM_043223877.1 mRNA upstream 34232 5481708 ~ 5490754 (-) True LOC122328171
XM_043222606.1 mRNA upstream 44614 5492090 ~ 5496079 (-) True LOC122327326
XM_043222899.1 mRNA upstream 75762 5523238 ~ 5525432 (-) True LOC122327491
XM_043222608.1 mRNA upstream 79754 5527230 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 287687 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 704683 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 853121 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 955200 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 1008043 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 80081 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 91080 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 91085 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 196937 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 411871 5859347 ~ 5861317 (-) False timm13

Expression Profile