RNA id: TU222105



Basic Information


Item Value
RNA id TU222105
length 779
lncRNA type sense_over
GC content 0.40
exon number 4
gene id G150086
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5418456 ~ 5470508 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATATGTGGCTTTTAATCATTACAATGCAAGTGTAGGCAATTCATATAACATCACTTGTAAAATCACAGCTGCTGTACCTTCACATGTCTGACAGAGTTGACTGATGTTCAGATGTGTGGTCTGctttctgatggggttgttgatcacacagctgtaggtgtttttatcctgatattccacctccagaggtagagagagactgatgctgagatcagacacactgatgctggacaataaactgtttcctttgtaccaggagagagtcacatgactcaCGTTCACCGCCGAACACAGCAGGAAACATCTGGACACTGATGAACGTttagatgatgatgaagaagaacaGTTTCGAACACAGTAACACTGAAGCTCTTCAATGAGGTTTTTCCACTGATGATGGCAGTCAGTTTATAAAGTCCAGTGTGTTCAGATCTGATGTTGTTGATGGTCAGATTTCCAGTTTGATTGTTTAACTGTAGTTTGTCTCTGAATCTCCCCTCATTACTGACAAAAAATAAGTTCATTTGGTCCCTTTTAAAGATTTCCGCTAATCGAGTGTCTTGAGGTCCAAACGTCCACAGTATCTGATCATCTCTGAGTCCTTTAACATCAGTGTTTAGATCGACAGAATCTCCCTCAGTCACTGATACCGACACAATCTCATCTGATTTaacatcaaacacacctgaaacagATCCAAACGAAACTCTTTATCATAATCAAACAGACTAGCTTACGGATAAAAGAAACATAGTGgggtttaaattaatatttacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006247691.1 lncRNA downstream 108566 5308250 ~ 5309890 (-) True LOC122327610
TU222076 lncRNA downstream 115218 5302860 ~ 5303238 (-) True G150071
TU222064 lncRNA downstream 141714 5273557 ~ 5276742 (-) True G150060
TU222031 lncRNA downstream 182996 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 191582 5218835 ~ 5226874 (-) True G150025
TU222121 lncRNA upstream 27433 5497941 ~ 5506152 (-) True G150092
TU222166 lncRNA upstream 38062 5508570 ~ 5512967 (-) True G150121
TU222216 lncRNA upstream 74760 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 108962 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 133649 5604157 ~ 5604418 (-) True G150184
XM_043222696.1 mRNA downstream 39569 5373452 ~ 5378887 (-) True LOC122327375
XM_043222560.1 mRNA downstream 44648 5364636 ~ 5373808 (-) False LOC122327304
XM_043222558.1 mRNA downstream 45732 5364636 ~ 5372724 (-) False LOC122327304
XM_043222561.1 mRNA downstream 45732 5364637 ~ 5372724 (-) False LOC122327304
XM_043222565.1 mRNA downstream 55277 5360068 ~ 5363179 (-) False LOC122327304
XM_043223875.1 mRNA upstream 1428 5471936 ~ 5480859 (-) True LOC122328170
XM_043223877.1 mRNA upstream 11200 5481708 ~ 5490754 (-) True LOC122328171
XM_043222606.1 mRNA upstream 21582 5492090 ~ 5496079 (-) True LOC122327326
XM_043222899.1 mRNA upstream 52730 5523238 ~ 5525432 (-) True LOC122327491
XM_043222608.1 mRNA upstream 56722 5527230 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 264600 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 681596 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 830034 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 932113 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 984956 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 57049 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 68048 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 68053 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 173905 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 388839 5859347 ~ 5861317 (-) False timm13

Expression Profile