RNA id: TU222122


Basic Information

Item Value
RNA id TU222122
length 2829
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G150093
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5451436 ~ 5454332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAATCTCTTGTATAGGGTTTCTCTGTTGCTGATGATCTGTAGTTtataaagtccagagtctgtggttctgatgtttctgatggtcagagatccagtctgacTGTCCATCTGCAGTCTGTCTCCAAATATATGAGTACTATCCTCTGTATAGACGTTCTGTCTGTGAATTTCAGCGATACGAGTCTCTTTAGATCCAAACATCCACAGTATCTGATCATCTGTCTGTACTTCAGTAACATCAGTGTTTAGATGGACAGAATCTCCCTCAGTCACTGATACTGACTTCACTGCATCTGTATCAGCACCAAAAGCACCTGAAGAAAAGCAGTTTATCAAGCACATTAAAAACCTGTTTAAGTTCCACTGGTCTTAAGGCAAGACACTtcatggcaaaaaaacaaacagaaaaaaaaactgaaatgcaccagactattatatatatatatgcatgtgtgtgtgtaatataatttaCCAATTCTTAAAACAAAGGAATTTAAGACTTACCAGTCGTAAGCAAAAGGCATAGGCAGAAGACAGATGCGCTGTGAATCATTTTTCGGACTTCATAAACACCCAACAATAGGCTAAACATGGCGCGAAAACGGGTGAAAAAGTGCGTCTATCCGTTCCTCTGCTTACGAAAAAAGTTCATTCTTAGATGTAGTCCGCGCGTTCCGTCACCTCTTTAGTAACAGAATAGAAATAATACAACTAGATGAAGATGGAAAGAAGTGCCGTTAGGTCTGAACTTTCGGTACACACGCCCTCGCGCGCACGCGcgctcacgctcacacacacacacacacacacacacaaccacCCCTCACTCCTCTCTTTGGCAAGctacaaaattaatattcagcTGTAAATCGTCTCTGCTAAGTCAATCAGCGGTAAATCtcctattattttaaaataaacatttttattaatagtttttagtCCGTCAATTTGGAAATTAGTTTGGCCAATAAATATTACtgataataatagtataaatataatgttagcATAAATATAGTTTGCTTTGTTCACATTAAAGCAATGCACCCTCCCTCCTCTGCGTCATAATGAGTTATGCAGAGGAAagtaaaaaacctttttaggAGCAAAGTTTTATCTAGCAAGCTCTCCTCCTcctacatacataaacacattctTGCAAGGACTGTACAAAATAAGAGCTCCATGTACTCTACAGATCCAAATGGTAGAATATCTAAGACACGTTTCACACAGCCATGTCCTGATAATGTCCAGCGATGCTATTATTTTAACTGATTCGTTTAGGAAAAGTACTCCGTACTTTCTTCTCAAGTTACTTATACGACTGATGATCTTCCAGCCGGAGTTGAATCACATTTAATAGCGAACATTGTGTTAcgttgttttcttctttttccggAACCAACGTGCAAACCACAGACTTAAATAGCATCAGGAAGCTCTCAGGTAAGCACTCATCACATAAATTCAGCCGCTGTTCACCCTGTACACACATACTGCAGGAAAACGGCAGTATGCTATTTCAGACAGCTCTAACACATGACCCCTAAACCACCGAGAAGCTGCAGCAGCCTCGTTCCTTTCATGTAACCTCtagaagagttttttttctgttggtttCTGGTAGGCCTGAACTCAAATTAGTGCCACCATCAGGTCAAAAAGTGTCTATTTACTTTCTGTAGTTTAAAGCACGATGCTTTTCCCAAGCTCCTAATCTCGaagcgcccctattatggattttggaaaatgtgcttttatgctctaagtgaataaaaacatcctgcaaagtttttactttttaagtgTGCTgtgtaaaacaatttttttttaaaagactcaactctgaatcattgaaggTAAAAATGCGAATaaggtaaaaatgtatattataagaAAACGCCACAAACACTGCTCTCATTTCAAGCTGATCTTTTACCTCTACACGTATTTCAAGTAAGCATTCTAGTTCTCTGAAGCGTTCTCACTACATTTGTTTTCACTGAAGCACAAAGTGTGGTATGAGCAAAGCACAAAATACACCTTACAAGTCCAAGCAGTTAATCATATAGTGCCAGTGCTGCAGCAACTCCATATGTTTGCCATACAAGACTTTGCgctttttaaatgcacagaagGCAAAAACATAAAGATGCACTGGCTTTTGGCCACGTGATTCGcgtattttttaaatcagctggGAAAAAAGGTGTTCCTTATGCTGAAACAGCTAGTTTATGCAAACAAGGGGCAGCTGCTATCCAATCAACTGGCAGCTGCCTTTTATTTTGGTACTTCCTCCAATTCATGTACTAATGTACCAATTTAGAGTCTGCGTCTTTCAAAGGCAGCAAAGGTCAAACCACACATCGGTGAATCCCTTTTCATGATAATTACATTACACGATCGAAAAAAGAAGCTGTATGTAGTTTTACACTCTCTGCAGCTTCACGCTTAagttaaataaatcattctgaGAATGTTCTCGCTCttaacatttgcatgtttactCTCCGCAAAGAGTATTTTCTTACATCagctccattttttttttatctacctCCTCTGTGTAGGTGTAAAGTTAGCCTTCCTCCACATCCTTTAGCCAAAAATCAGCAGAGCTTGCTATCTAATGTGTAATGCTTATCTCATTCTCTTATGGGAGCTGAATCAGGATCCATGATGGATAGAAAAGCTTCGTCAGTTAGCTCATTTAATTGGCGCATGAATTGGCACAATCACCTGCAGCAGTTATTGAACGTTGCCCTTTTACATTTTAGGCTCGTCCGACTCAGTGGTCTATTAACATCAAtgtcaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222101 lncRNA downstream 3960 5441543 ~ 5447476 (-) True G150086
TU222100 lncRNA downstream 3960 5442348 ~ 5447476 (-) False G150086
TU222099 lncRNA downstream 22667 5428197 ~ 5428769 (-) False G150086
TU222098 lncRNA downstream 25897 5418456 ~ 5425539 (-) False G150086
XR_006247691.1 lncRNA downstream 141546 5308250 ~ 5309890 (-) True LOC122327610
TU222121 lncRNA upstream 43609 5497941 ~ 5506152 (-) True G150092
TU222166 lncRNA upstream 54238 5508570 ~ 5512967 (-) True G150121
TU222216 lncRNA upstream 90936 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 125138 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 149825 5604157 ~ 5604418 (-) True G150184
XM_043222709.1 mRNA downstream 17293 5430855 ~ 5434143 (-) True LOC122327381
XM_043222696.1 mRNA downstream 72549 5373452 ~ 5378887 (-) True LOC122327375
XM_043222560.1 mRNA downstream 77628 5364636 ~ 5373808 (-) False LOC122327304
XM_043223875.1 mRNA upstream 17604 5471936 ~ 5480859 (-) True LOC122328170
XM_043223877.1 mRNA upstream 27376 5481708 ~ 5490754 (-) True LOC122328171
XM_043222606.1 mRNA upstream 37758 5492090 ~ 5496079 (-) True LOC122327326
XM_043222899.1 mRNA upstream 68906 5523238 ~ 5525432 (-) True LOC122327491
XM_043222608.1 mRNA upstream 72898 5527230 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 297580 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 714576 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 863014 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 965093 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 1017936 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 73225 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 84224 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 84229 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 190081 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 405015 5859347 ~ 5861317 (-) False timm13

Expression Profile