RNA id: TU222171


Basic Information

Item Value
RNA id TU222171
length 3552
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G150125
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5579470 ~ 5583041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCTTTGTGATAAAAGTTTATTACTTTAGCTTACAGTAGAATTTACAGCATAATACACATGATCGGTTGTTTATAGGCGTAATAAACGTTACCCTCATGACAAAACCTCATGTCAGAGTCaatgagaacatttttttttaatatattgccaATGAAGAAAGGGCCGTGTAACAGAAAGACCTGTACAAGATGAAAGAGGACATCCCATTTCCCAAAAACAGCGAGGCAGAAGCGGGAAGAAAACATGtagtatttgatatttaatgtgTTCCAGTAGGGACATCTATTATGTTAAACGTTCAGAGTCTTTTTGACGGAGAAGATGATGTCCTTGATTTGCGGTATGCTGTTGTCCTCCAAAATCTTGGCGTACGGCATTGGAATATCTACACCCGTGACCCGGACCGCAGGGGCGTCCAGGTAATTGAAAGCAGGACCTTGAATcgaaaaagaaataacaaatcCATTTGCTGAGGAGAAATGTTCGGTATGACACGCTCCCTAATACATTTGAAAGCAGAGCAAGTAATCGTccaacaaaaaatacagcatactGACgtttaaatgagtttgtttcgtACTAAAAAACCAAGCAGTATATGTGCAGAAAACAGCAAAGAGTGCTCTAGCGTTCCATTCAATTGAAtggtaaaaaatacagtaaggtTATAGatgataatatatatgtatatacccTCCATAATCCTGGCGAGGATCTCTGCCCCGACTCCAAACTGAGGCCAGCCTCCCTCCACAGTGATGAGATGATTGGTTTTCATTATGCTTGTTTCAATGGCTTCCGAGTCCAGAGGCCGGATTGTGCGCATGTTGATCACCTACAGAAGAAAACAGAGGGGTCCGAGTTCACAGATTCCATCCGAATTGTTTTAGCTATTTCAGCTATTAGCTAAATGTGAGAAACACACATACGGGTCAATTAAGTCTACGTTTTCTGTCTGATTGCAtcttttctgttaaaaaatagGTTTAAGTGCTAAAAAACAATGACAGAGTACCTCTCCTATATATGGGAGACTTTCCtaaaaaaatttgttatttGTCATTTCTCTGTTATTCAAAGTGTCAGAACATCATGTGGTGCGTCCGGCGTTTCGGAAACATCTTTGAAACGACCCTTAATTTATTCAGATTAATTATCTGCACCGTCTGCATGATCTCCAAAGGGTTTTGTAATCCTGTATAAAACGGCAAAGCATGTTTCCTTTGCATTTCCATCGTAACATTCTAacaaataacatatatatatatatatatatagtgatatgTAGTTACCAAATATGGATTTTGtgtggtataaaaaaaaaaatattaagcttaaaaatattaagtctttttattataaatttcaaAGTGACCTTCCATGTTTTGTTCAGGTGACTAATTCTGAGCTTGTAAATTCTACAAACCTCATGCGGTGCGACCAAATATCAGGCGGTGCGACCACTGCAGAGTGTTTTCCATTATAGATATATGTCCCAGATTGGcagttttttgtgcatttttttaatttaaattaaatgattaaataaatatgaatcagTGCTATAGTATGCTTAAGTGAAAgggattttaaaaacatctttatcaCTTTTAGTCCGTTAACTACATTTAAGGAGGCAACTTTGAAATTAGAGCGCAACAatataagattaaataaaaaaaaaaaaaaaaaaaaaaagaattgcaaaTACTTTTGTTTCAAAACACCTTAATTACTGTCTatctacataaaaatgttaagcatGTTAAGGaagttaattttaatataaatcatgGTCGCACCAAATgacttttttgccttttttttttttttttaagactatGTAAATGGTTTTTACTTTTTGGAATATTTCTTTCACTGCATTTTACACGAACGACCGCTTCATTCATTTACTATCAATCAAATCAGCTCTTCGGAATCCTTAAAATGTGCATCAAGTCTTTATTTCAGCCAAACTAAAAATGGCATTTaacacaattacacacacacaaaaaagacacCATACCTCACATTCTATCCCTTCTTTGGCCAAGACGGCAGCGGCGTCGAGACACAGGCCGACCATTCGGGAATGAGACACCAGTGTTACGTGATTTCCTGcatcaaacagacaaaaaaagtatgaaagtcCATCCGCCATCAGCGGTTCAACCATATGGtcatgaagctacaagaatactttttggaCTTAAACTGCGTATGCTGTTCACCGAATACTCTCAAACTGGCACTACGGTGACGTTACAGTGCTGAATTgttgaatacattttgttttattaaaatattcttcataACATCACGGTCGAACCACTCATGCCAGATGGAGCATCCTGACAAAgcctttcatacttttctggacctagATGAAGTGATTGCAGCAATTTTTAATTTGGGATGgagtaacaaaatatttaaaggaacagttcacccaaaaattaagaTCTAAATACTTTTGCTTATAATTTCTGCACAGGAGAGACTTGGTGTTGTTTCCAAACAAAATCGGAACAGCCAAAatgagtataaaaaaaaaaagcatattaaatattgGCAAAAATCCAAAATCATGCATCCCAACTATTATACTCAGCACTCAAAACATCACCCACCCTGTCTCTCGATCTTAGCTTTTCCGATTGGCACGACGAAGTCTTTTGACTGAGCCTGTTCAGACATCTCAAACGGCACGCCGTACATCAGCTCGTTCTCCAAAACCACCACTGAAAGGGACACGAGACAACGGTCAGAGATGCCCTCACTTCCTGCGATCATCAGCGGCACGCGGCGAGGAACTCACCAGGGTTATCGTCACGGATGGCTGACTTCAGAAGGCCCTTGGCGTCCTCGGCGCTCAAGGGGCTGACCACCTTCAGGCCGGGACAGTGACCGTACCAGGCGGCGAAACACTGAGAGTGCTGGGCGGCCACGCCGGCCGAAGCTCCGTTGGGCCCGCGGAACACAATGGGGACTGACTGCAGGCCGGCAGACATGTAGTAGGTCTTGGCGGCGGAGTTGATGACCTGGTCGATGGCTTGCATGGAGAAGTTGAAGGTCATGAACTCACAGATGGGCCTCAAACCAGCCTGAGAGAGGACGTGACGGGTTACGATGGAGCTGGCATTCTTTTAATCAACGTCATTACAGGAAAACTCACCATGGCCGCTCCAACGGCGATGCCGGCAAAGCCCATCTGAATGGAAAAAGCAGgaaatgcttttaaacatagcaacaacaacaacaaaaatacgtAACGCGCAAGTTTATCATCATGGTCACCTCTGTAATTGGTGTGTCAATGATGCGTTTATCTCCGTACTTCTTCCAAAGGCCTCTGCTAACCTGCAAACCAACACAAGCAACTTTAAAAGATGCCATGTCTAGTGCTGATTtgcaaaatacaatacaaatatttgcatCTAACCTTATATGCGCCGTCATACTGAGCGACTTCCTCTCCGAGGAGGAAAACCCGTTCATCCCTCTCCAGCTCCTCATCCATGGCCTGGTTGAGGGCATCTCGGACCGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222216 lncRNA downstream 33702 5545268 ~ 5545768 (-) True G150161
TU222166 lncRNA downstream 66503 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 73318 5497941 ~ 5506152 (-) True G150092
TU222122 lncRNA downstream 125138 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 131994 5441543 ~ 5447476 (-) True G150086
TU222262 lncRNA upstream 21116 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 71010 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 78709 5661750 ~ 5662188 (-) False nol8
TU222313 lncRNA upstream 175283 5758324 ~ 5763955 (-) False LOC122327537
TU222203 lncRNA upstream 239888 5822929 ~ 5823913 (-) True G150152
XM_043222652.1 mRNA downstream 21231 5550629 ~ 5558239 (-) True rbck1
XM_043223015.1 mRNA downstream 37390 5539927 ~ 5542080 (-) False bloc1s1
XM_043222783.1 mRNA downstream 42897 5533196 ~ 5536573 (-) True rdh5
XM_043222608.1 mRNA downstream 46661 5527230 ~ 5532809 (-) False gls2b
XM_043222522.1 mRNA upstream 24003 5607044 ~ 5634799 (-) True stab1
XM_043222555.1 mRNA upstream 55097 5638138 ~ 5652155 (-) True nisch
XM_043222556.1 mRNA upstream 61475 5644516 ~ 5652159 (-) False nisch
XM_043222551.1 mRNA upstream 78700 5661741 ~ 5672809 (-) True nol8
XM_043222858.1 mRNA upstream 98550 5681591 ~ 5687034 (-) True ogna
XR_006247648.1 other downstream 37390 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 37411 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 46661 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 425614 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 842610 4716738 ~ 4736860 (-) False LOC122327545
XR_006247631.1 other upstream 61372 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 276306 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 406459 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 653211 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 699415 6282456 ~ 6285577 (-) True gcga

Expression Profile