RNA id: XM_043223015.1



Basic Information


Item Value
RNA id XM_043223015.1
length 713
RNA type mRNA
GC content 0.48
exon number 4
gene id bloc1s1
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5538556 ~ 5542080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTCCTTTTACGCATGGACCCTCCGCGCTTTCCGTATGTTTTGGGACGTTTGTCATGTGAGTCCAGGGATTGTCAAAACGTTTAGAGAAAACCGACTTCATCAAATGAACgtgttttattttccatcaCGATAAATGGTTAAAATGCTCTCCCGTTTATTAAAAGAACACCAAGCGAAACAAAACGAAAGGAAAGAGTTACAAGAAAGACGAAGACGAGAGGCCATAGCAGCAGCAACATGTTTAACAGAAGCCCTGGTGGATCATCTCAACGTAGGGGTGGCCCAGGCGTACGTCAACCAGCGCAAGCTGGACCACGAGGTGAAGACGTTGCAGGTTCAGGCCAGTCAGTTTGCCAAGCAAACGGCCCAGTGGATCAACATGGTGGAGAACTTCAACCAGGCTTTAAAAGAAATCGGAGACGTGGAGAACTGGGCGCGAAGCATTGAGATGGACATGCGGACGATCGCGACGGCTTTGGAGTACGTGCACAAAGGCCCGGTTCAGCCGGCGTCTTCGTGAGCCGACGGACTCTGATGGTCCGAAACGGACAGAAGCACTGAGGCTTTTCTTCAAGCCGTTGGTGAAACTCGGACAGGACGCTGTTATTTTCCCCCCCAGTACGTAACCGATGGAACAGCTGTTTATTTCTCATTTGctccatttttattttcgtATGCTTgcgtaataaaaataatgatctgTTGTGCTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222166 lncRNA downstream 26960 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 33775 5497941 ~ 5506152 (-) True G150092
TU222122 lncRNA downstream 85595 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 92451 5441543 ~ 5447476 (-) True G150086
TU222216 lncRNA upstream 3188 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 37390 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 62077 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 111971 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 119670 5661750 ~ 5662188 (-) False nol8
XM_043222783.1 mRNA downstream 3354 5533196 ~ 5536573 (-) True rdh5
XM_043222608.1 mRNA downstream 7118 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA downstream 7118 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA downstream 9313 5527230 ~ 5530614 (-) False gls2b
XM_043222899.1 mRNA downstream 14495 5523238 ~ 5525432 (-) True LOC122327491
XM_043222652.1 mRNA upstream 8549 5550629 ~ 5558239 (-) True rbck1
XM_043222522.1 mRNA upstream 64964 5607044 ~ 5634799 (-) True stab1
XM_043222555.1 mRNA upstream 96058 5638138 ~ 5652155 (-) True nisch
XM_043222556.1 mRNA upstream 102436 5644516 ~ 5652159 (-) False nisch
XM_043222551.1 mRNA upstream 119661 5661741 ~ 5672809 (-) True nol8
XR_006247634.1 other downstream 7118 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 386071 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 803067 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 951505 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 1053584 4482821 ~ 4486343 (-) True LOC122327455
XR_006247631.1 other upstream 102333 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 317267 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 447420 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 694172 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 740376 6282456 ~ 6285577 (-) True gcga

Expression Profile