RNA id: XR_006247648.1


Basic Information

Item Value
RNA id XR_006247648.1
length 1965
RNA type transcript
GC content 0.42
exon number 5
gene id bloc1s1
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5538556 ~ 5542080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTTTTACGCATGGACCCTCCGCGCTTTCCGTATGTTTTGGGACGTTTGTCATGTGAGTCCAGGGATTGTCAAAACGTTTAGAGAAAACCGACTTCATCAAATGAACgtgttttattttccatcaCGATAAATGGTTAAAATGCTCTCCCGTTTATTAAAAGAACACCAAGCGAAACAAAACGAAAGGAAAGAGTTACAAGAAAGACGAAGACGAGAGGCCATAGCAGCAGCAACATGTTTAACAGAAGCCCTGGTGGATCATCTCAACGTAGGGGTGGCCCAGGCGTACGTCAACCAGCGCAAGCTGGACCACGAGGTGAAGACGTTGCAGGTTCAGGCCAGTCAGTTTGCCAAGCAAACGGCCCAGTGGATCAACATGGTGGAGAACTTCAACCAGGCTTTAAAAGAAATCGGAGACGTGGAGAACTGGGCGCGAAGCATTGAGATGGACATGCGGACGATCGCGACGGCTTTGGAGTACGTGCACAAAGGCCCGGTTCAGCCGGCGTCTTCGTGAGCCGACGGACTCTGATGGTCCGAAACGGACAGAAGCACTGAGGCTTTTCTTCAAGCCGTTGGTGAAACTCGGACAGGACGCTGTTATTTTCCCCCCCAcacattttacCACCCCAAGTTTTCCTTGTACACCTGCACAGATTCACCGTCCAGCTTCTGGCTTGTTTTGACCAACATTTGGCCTCGGCAATGAACGTATAGTACCAGAATTACGAAACCCTGTCccttttttagcttttatagACGTGACGGTGCgctaaaatagattttatgcatttttttgtgggATTTCACGGTTGGCTCAGTTTTACTTAACCCACTAACTACTAACACCGTGACGCTGCATAATCCACTTTTACAACAAGGTCTTTCAGCCTCGGGATTAACATTAAGgacaaacagtaaaacattaaaaactagcCCGAGCAGAATGTGGAGGTTTTTAAATCCCAACACGCCAGGTTATAAATATTCGCTCCGCTCCACTGCATATTTCcagtagttttatttatctttatttctcAAGATCCAAACCGTTTATGGGCAAAAACAGATCACtccatatttaaatgttaaacagttatgttttttattatgctgtCACATCGTTTTATTGCattagctgtatttatttggttgGTTAGttagtttttaatcaaaaaccAAATGCAGCTTGACTTagattaactggaatgcacggtttttttaaaaagcagatgcTCCCCATAATGGTgacgaattgttgaataaagtcattatttaaattttctttttcgtACAAAAACCATTCTCGTAGccattacagttgaaccactgataaGTCTTTCGTACTTTTCTGGACCTCGACCGGGGTTCATCACTCGGCAGTcaatattttaatccaaaatattatCCAAAGTATCGTAGGCTACGTCTGTTATCACAgttatttcataaatgtaagACACGACTGTGTGTGATTGTAAGAAAAATAGGTTTTCACGATTTCTTTGGGGTTGGGTTATGGCACTGTTGTGGTTCAGTTCTGGCTAAAATACGTTGGCCTGAACACATattaatctctctcttttttttgtacaacGAGAAATATAAAATCTCGTTATTACGAACTGAGTGGGATAATGGTGTGCGTTTCAACGCTGCGTTAAGGAAAGAGTTTACCGCCGTTTTCGAAAGAGGTTTAAAGCGGACTTTGTTTACAGTTTCTGGAGCTAAAtgctaattttgttttaaaaagggCGCGCGTGACCAACCCAAAAACTACCAGGGCGATTGCTCAAGTGGAAACTTCActtcacaataaaataacaaaagcttCTTCTATTCGACGACTATTACTACTAATTACAAACGAGTGCACGCAAAAATATAAACTACAGCGAAACAATCATTGCTAGCGGCGAGTAGCCTAACAATGTAAACGGATATAGAAATAAAGCGTCAAAC

Function

GO: NA

KEGG:

id description
K20185 BLOC1S1; biogenesis of lysosome-related organelles complex 1 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222166 lncRNA downstream 25589 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 32404 5497941 ~ 5506152 (-) True G150092
TU222122 lncRNA downstream 84224 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 91080 5441543 ~ 5447476 (-) True G150086
TU222216 lncRNA upstream 3188 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 37390 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 62077 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 111971 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 119670 5661750 ~ 5662188 (-) False nol8
XM_043222783.1 mRNA downstream 1983 5533196 ~ 5536573 (-) True rdh5
XM_043222608.1 mRNA downstream 5747 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA downstream 5747 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA downstream 7942 5527230 ~ 5530614 (-) False gls2b
XM_043222899.1 mRNA downstream 13124 5523238 ~ 5525432 (-) True LOC122327491
XM_043222652.1 mRNA upstream 8549 5550629 ~ 5558239 (-) True rbck1
XM_043222522.1 mRNA upstream 64964 5607044 ~ 5634799 (-) True stab1
XM_043222555.1 mRNA upstream 96058 5638138 ~ 5652155 (-) True nisch
XM_043222556.1 mRNA upstream 102436 5644516 ~ 5652159 (-) False nisch
XM_043222551.1 mRNA upstream 119661 5661741 ~ 5672809 (-) True nol8
XR_006247634.1 other downstream 5747 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 384700 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 801696 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 950134 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 1052213 4482821 ~ 4486343 (-) True LOC122327455
XR_006247631.1 other upstream 102333 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 317267 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 447420 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 694172 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 740376 6282456 ~ 6285577 (-) True gcga

Expression Profile