RNA id: XM_043222971.1


Basic Information

Item Value
RNA id XM_043222971.1
length 4330
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122327537
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5758006 ~ 5763982 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGAAGCGGGAAAACCGCTACATCCGCCCGTCATACCTTCTCCTCAACTGACTGAAGAGCAGCGCTATGGCTTCCAACGTcctaattcttctttttttcgcGGGAATATTCACGATCGCAGTCGGCTTTGAGAGATGCAGCATGTTTAGTAAAGACGCCGTATACTGCCATTTCTGGAAATCGGAGATCTGCTGTGGGAACTGTGACAAAAGCTACTGCTGCTCTGATCCGCAAAAAATATTTACCAGTAAAGCGCAATCCGACTGTCATTTCAAAGACCTCAGGATCTTCCCTAATTATTCTTCTCAAAGCAACGCTGTTTCCATTGCCATCGGTACTGTCTTCATACTAGGGCTCGTAGCCATCTTTATTTTGCTCATCTGCTGGGTCAATCCACGCTGCTATCTCTATAAGAGGTTCAGGAATCCTAGACCTGTGGCTACGGTCGTGACGGGACAATACCATCCGCAGCCTTCAGCCATCATTCAGGGTGGTCAGTACAATTCGTACCAGGCTCTGCCAAGTAACCCACCTCATGGAGGCCAACCGATGTCAACCGGACCACCGCCCTCATATCAGGAGGCTGTAGGTCCGGGGTATTCTGTTCCCATTCAGGTTGCGCATGACGGCGGCCAGGCCATGTTCCCTCTACAGTCAGCGCTGCCCACAGACTACACCTCACCTCAACCAGCGTACAACCCCGCTTACACCGGATTCATCAGTCCAGTCGTCAAGACCAGTAACTAACTCCAAACCGCTGGGTTCTGGAGGCTTACGCGTTTCTTCTCTGCTGTTGTGAATACAGTTACAATGGGGCTGTGAATAatagtgttgttgttgttcgtTAATGTTGCTGCATTTGTGCGCTCTTGTTCGACATTGTTTACACTTGCCTTAAACACTTGAAACttgaatttctctctctctccctgttcTAACCAAAGATGCATCTACTGTAGTTATTGTGGATCCTACATTGGTCCAGATTTGTTTTGTGATTGTAAATTTAAGTTGCGATTGCGTCTGTCCAATCATTTCACGCCGATCAATCAAAGCAAGTTGGCTTTGTTGGCGAGTCCAgagagaaatttagcatttagtTTACAGAGGCGTGtctgtgtgcatttatacaattatgtatttaaatattaaaacacttcaCACGTACACTGGTGTTTTTTGTTGATGTGGTTTAgatgtttttgggttttttgcgTGGGAGGGGCACTACAGCCGCTTATCAGGAAATAAGCCATAAGCAAATCCAACTATAGAAGGGGACTTGTGCTCTTTCCTAAAGTTATATTCGTGGCGACGGTAGGTGAGTGtcaatttttctgtttaattaagCTGGCAAAGCGCGGTAAAGAGAGTTTTCAATGCAACATTAAGATTTTGGCTATAAATCAGCCCACCAAAGGCATTCTCCGAGTTTTGTTTTCAAGCGGCGCTGTCCTCCGAGACTCTATTTCATAATGCCCGCTGGCTATAGCTCCCAAAGTTGAACCGGCGTTTATCTTCACCCGTTTTGATTTCTCTGTGGCGTTTTTTCTACACAGCAATCGCTTGTCTCTAAACCCCTTAGTTAGGAGATGTTCATGTTCGCAAGCCATTAGCTAAATCACACACGAATATATACACTAATGTAATCTTTCACAAAGTACTGATGTGCTTGACCAGTGGTGTAGTCGGGGCAGGTAtacttaagtgtttttttttttttttgctttgtttgcgTATTACAACTTCTGAGGACCAATGTGAGCGTAAACCATCGTTATACTCACTTGTTTTGTTGATTAAGACGTCCACAATCTGCTCATGCGTTAGCGTCCCCTTTAACCGTACcccaagtgtttttttataaactcgCGAACGTTTGTGGTAATTGgtgcatttttgtttgaattCTGTCGTTTCCGGCCCCCGACGGTGAAGCAGTCAGgtgataaatgtgtttgtatattgtttttgcCCTCTGTTCTGCCATTGCTGTTTAAATGTACGTGATTTATGATGCCTTTGAGTCATCATGGCAGAATGTAACGTTATCCGAGCAGCGCAGGGTTCTTGAAGTTCTAGACGTTTCAGCTTGATGAAGAAGCATGCATGAATCAGGAGGTAACAAGCTACATACAGAAAGTACACAAATACAGtcaaaaaaacagtatttgccTAAAACACAGTCCATTATgcgttaaataaatgcagcatttggCTGCAATAGGATTTGTGCATCTCCTACTGACCGTTATTTATTGTCTATCCAACAAcgaattcaaataattttttggaattatttaaaCGTTGCAAGGTTATCCCACTGCAAAAAAGTAAAGACTTAGCTAGCTAGATTATGCGGTTTCAGTCTAATGAATACCATCTGTGCTTCttgtttcaaatgtttcaaattttATGATGAGCGAATGGCCCAACAATTTCACCGTTCAACCCAGAGAAATATGTTCAGGCCCGGGCAAGACATCGTCACACTCAGTCACGGCAATGTAAATCTGTAAATACGAAGCAACTGACAAAGCAATGcataattgaaaaatgtaatgtataaaaatatatgcaaaaaatgaCAGGTTGTAGATGTAATTCATGTGTAATATAGATTGATATATTCCTAATAAACATTgatttctcccttttttttggTCACTTATGTAAGGCTGGATGGGTGGGGGGTAGTTTCGTTAGTTAGTGGTATTTCGTTTTAGGACTACACCACTGGGCTCGACATTAAAACCCGTTAAATGCGTGTGGATTTCAGCTGTGGCGGGAAACACAGTCACCCACACTAACCTCTGGCGGGTTGAATTTTAAATAGGCTACTGTAATATAACTTTACATTAATGCTCGCCTGAGACAAACTGGAGTACGAACTGGTCCAGTGCTTAGTTCGTTATCTGAAGAGCTCATTTGCGGAAACCAGTAGAGGTATTttgattagttaaaaaaaaaaaacttcatttaaaGACTAAGTCAGTTGTCCGGAAGCCAAAACGCTCAATTTTTATGttgcttgtgtttattttcacaaGTCATTCTCTTGATCATGGAAGGCCCGTCCATTGTGCCCATGCTTGTGCCCACAGTAGTGTTTTTCACGGCGGCCGTTTCTATGTGCCTCCTCTGGTACTGCTGGTGGAAAAGATTCGCGAGGCAGCATGCGCAGACAAGAACTACGGTCATGACTACACATCAGCCGCAATACTCATATCACCAGCCTGTGGCTAATAACCTACAGCCAGCTTATGGAGGACAACCCTTTCTGACTGGACACTGTCAGCAACCTTATGCCCCCggaccaccaccaccacccacGTATCAGGACTCTAGTTGGTTTCCCGCTCCCTACAGTCAGGCTGCATACGACGGCGGTCAGATGGTGTTCCCTCTACAAGCAGCGCTTCCCACAGACTACACCTCACCTCAAACCCCGTACAACCCTGCTTACGTAGAATCACAGACCACTTAATCACCCAGAATGGCCGGCTTTCAACCCCGGATCACACAGAACTGTTTGCTTCCGCGCTCTTTTACCATTTAAAGTGCGCAACTACAGACCGATTTGTAGTTTGCTTTTATTCTGTGGTATTTCATTCAACGGTCAATAAAAGGAATtttgaactcttttttttaacggTCAAAAATTAGTGTAAAAAAGGCTATTATTTGATTGTATTGAACATTATTCTGTCAAACAAATGGACAGCTATCAGTGCTGGACGTACAGTCGCCGAATTGTAAGATATTActcacttttatttgtttgtctctCTTTATTTAAACCTAATATATGCGAAATGTTAGATTAAACCTTTAACCATTTTAAGTTTTCTCGTTCTTGACACAGACACATCTagactttgaaaataaatgtttcgaATTACACTGGTGGGTCTGGTTTTGCTTGCCTTGCCAGGAAAGGACTTTAAATGTCTATTAAacagtggggggaaaaaacagcatccatccatccatccctatttcgtatttaaaatcaatatgcTTCACGTGTTACACTGCTGGGTCTTGGTTTCGATGAAAGTTTCTTGCATGGGAGGGACATAGCAGTCACTTATCAAGATCGTTCGAGTTACAAGAGCAGGAAAAACATGGTTTAATTGGTCTGCAATCTACACCATCAGCAAGATGAGCAGTTATGCTTCTTCTGCTCTTCTCAGcagttttaatggaaaaaaagtcatGGTAATGTGTTATCCCGctaatgtgttttatgttttcgaAGCTCCATTTGTTACATTGTTATAAGCTACGGTGTTTTATTTAGTGGTcaataaaaggcatttttaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222267 lncRNA downstream 95818 5661750 ~ 5662188 (-) False nol8
TU222173 lncRNA downstream 102630 5654051 ~ 5655376 (-) True G150126
TU222262 lncRNA downstream 153588 5604157 ~ 5604418 (-) True G150184
TU222171 lncRNA downstream 174965 5579470 ~ 5583041 (-) True G150125
TU222216 lncRNA downstream 212238 5545268 ~ 5545768 (-) True G150161
TU222203 lncRNA upstream 58947 5822929 ~ 5823913 (-) True G150152
TU222347 lncRNA upstream 87303 5851285 ~ 5851890 (-) True G150232
TU222348 lncRNA upstream 90219 5854201 ~ 5854403 (-) True G150233
TU222349 lncRNA upstream 90803 5854785 ~ 5855167 (-) True G150234
TU222402 lncRNA upstream 380896 6144878 ~ 6155016 (-) True G150271
XM_043222924.1 mRNA downstream 828 5754395 ~ 5757178 (-) False LOC122327508
XM_043222925.1 mRNA downstream 878 5754395 ~ 5757128 (-) True LOC122327508
XM_043222949.1 mRNA downstream 6924 5745190 ~ 5751082 (-) True shisa10.1
XM_043222948.1 mRNA downstream 6929 5745190 ~ 5751077 (-) False shisa10.1
XM_043223011.1 mRNA downstream 24464 5732383 ~ 5733542 (-) True si:dkey-42i9.4
XM_043222595.1 mRNA upstream 56 5764038 ~ 5772073 (-) False bap1
XM_043222594.1 mRNA upstream 56 5764038 ~ 5772071 (-) True bap1
XM_043222977.1 mRNA upstream 25833 5789815 ~ 5793054 (-) True LOC122327539
XM_043222613.1 mRNA upstream 75766 5839748 ~ 5846930 (-) True sass6
XM_043223026.1 mRNA upstream 95365 5859347 ~ 5861332 (-) True timm13
XR_006247631.1 other downstream 105848 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 215926 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 215947 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 225197 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 604150 5145926 ~ 5153856 (-) True LOC122327354
TU222175 other upstream 95365 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 225518 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 472270 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 518474 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 853593 6617575 ~ 6659352 (-) True G150440

Expression Profile