RNA id: TU222668


Basic Information

Item Value
RNA id TU222668
length 630
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G150442
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6603055 ~ 6606554 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatattcagctaaattcaaaatgactaataaataaatgaataaattacttattaaatttattttaattatttattaaaatttctaaatataaaatattttgaaacgttatttaaaaagacaacatttattaaaatgaaatgtaaaaaaatctaaattattcaatgtaaaaatatcaaagaaataaaaagagtaagttgaaacatttattaaaaatgaaagtatactaaaataatatttaaggaacacatttttcaaaaaacattagtTTTCCCTGACCTGTGCTAGAAGGTGATTGGCTGGCTGAGgttgaggaggaggaggcagaGGCGGAGGGGCCGGGGGAGGGTGTAGAGCCATGGGCTGCTGGCCCCGCCCCTGCTGTGATGTCAGCGTGGGGTTATAGATCACTGGGCTGACTGGTTTTGGACAGTTTCCCGGTGCTCTTGCTGCTGGCTGTACTGTCTCCTCGGATCAGCAGGCTGATGCCGCTGAAGCTGTTGGCTTTGGTCATGGCAGGCTTCAGGTTCCTGTGGGAGCTGTCTGAATCCGTGCTGCTCCAGGGCCGAGGGTCCGAATACTTCAGCTCGTTCTCGGAGCTGCTCTGACGGCTGTTTCCCGAGTGCCCGTCT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04742 Taste transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222684 lncRNA downstream 3522 6597904 ~ 6599533 (-) True G150453
TU222491 lncRNA downstream 216288 6384156 ~ 6386767 (-) True G150325
TU222482 lncRNA downstream 221083 6377687 ~ 6381972 (-) True G150322
TU222325 lncRNA downstream 257905 6344139 ~ 6345150 (-) True G150216
XR_006247652.1 lncRNA downstream 288828 6313175 ~ 6314227 (-) True LOC122327580
TU222687 lncRNA upstream 1235 6607789 ~ 6609628 (-) True G150456
TU222708 lncRNA upstream 108240 6714794 ~ 6715949 (-) False cep70
TU222719 lncRNA upstream 192609 6799163 ~ 6805440 (-) True G150472
TU222714 lncRNA upstream 215649 6822203 ~ 6939000 (-) False glsa
TU222747 lncRNA upstream 265098 6871652 ~ 6873176 (-) False mfsd6a
XM_043222393.1 mRNA downstream 24628 6524786 ~ 6578427 (-) False zranb3
XM_043222394.1 mRNA downstream 24628 6524786 ~ 6578427 (-) False zranb3
XM_043222395.1 mRNA downstream 24628 6524786 ~ 6578427 (-) True zranb3
XM_043222396.1 mRNA downstream 24632 6524786 ~ 6578423 (-) False zranb3
XM_043222397.1 mRNA downstream 30679 6524786 ~ 6572376 (-) False zranb3
XM_043223210.1 mRNA upstream 108929 6715483 ~ 6728690 (-) False cep70
XM_043223208.1 mRNA upstream 108929 6715483 ~ 6728690 (-) False cep70
XM_043223214.1 mRNA upstream 108929 6715483 ~ 6728690 (-) False cep70
XM_043223207.1 mRNA upstream 108929 6715483 ~ 6728690 (-) False cep70
XM_043223213.1 mRNA upstream 108929 6715483 ~ 6728689 (-) False cep70
TU222327 other downstream 317478 6282456 ~ 6285577 (-) True gcga
TU222410 other downstream 366190 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 610332 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 741738 5859347 ~ 5861317 (-) False timm13
XR_006247631.1 other downstream 950897 5644413 ~ 5652158 (-) False nisch
TU222663 other upstream 11021 6617575 ~ 6659352 (-) True G150440
TU222738 other upstream 248216 6854770 ~ 6856863 (-) False nab1a
TU222739 other upstream 248216 6854770 ~ 6889657 (-) False nab1a
TU222740 other upstream 248216 6854770 ~ 6881469 (-) False nab1a
TU222746 other upstream 261289 6867843 ~ 6869546 (-) False mfsd6a

Expression Profile