RNA id: XM_043223216.1


Basic Information

Item Value
RNA id XM_043223216.1
length 2529
RNA type mRNA
GC content 0.51
exon number 18
gene id cep70
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6714794 ~ 6728690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTAATCTGTGGAAACCTGCGGCTTCCCTCTCACGGCTGTCCCGTGGTGCACCGGGAGCACGTGGGTTCGGGCCCTATCGGCGCTCCGCACCTGTGCAAGGTGAGAAAGCGGAAGATAATCCTGGCACGGATTCGCCTCATCATCTCTGCGCTTCGCGGGAACCcgaacaaacaaaataaagtagCCTTATCTGCCATCAAACCTTCAAAACCCCCAAAACTTCCACCATCTGCCGGCGCCATCTTAACTTCAGAGAACTTCCCGCGCGAGGAGAAGAAAGCTGCCCTCCGTCGAGCCAGCCGTGGATGCGTTTACGGTTCAGGGAAGAAACGAGAGATTTGCGGATGATTTTCAGAGCTCGATCGGACTCAAGGAGTAAAATCGTGACTCGGTTGCCCGGCAACACGTGCTCCCGCCAAAAGGATGCGAGACTCAAGAACGGAGAGCCAGGCCTGTCCTGTTCAGAACAAAAGTGCAAAACTAGTCCAGGCTCTCAGGTTAGAGATGATGGAGCAGCAGGAGCAGAAAGAGTGGGACGCTGTTAACAGGTTGCTGCAGCATCATGGCTTCAAACCTGTCAGCTTTGCAGACCCAACAGAGAACAAGAACCTTGCGGAGTTGGTTTTGTTGGAGCGCAAGTCTGCATCTGAAGTACGGCTGATGTTGAAGACGATGCTGTCAGATTCTGAAAGAAGACAAGGTTTAATTCAAGAGCTCATTCAGTCCAACAGCCAACTAAAAGAGGAAGTGCAGCAGCATCAGACGCGGGCCGCCCGTCAGTCTCAGAGGGCCGCCGAGCTGGAGGGCATCCTGGACGGGGTGAAGGTCAAAGTCCAAGACCTAGAGGACTCGTACGTCGGTAAAGCGGCCCAACAGCGCAGCCAGTTCCAACAGCTGCAGCAGGAGAGGAGAGATGCTGAGAAACGCTGTCAGTCTCTGGAGCAGAAGCTGTCTCAGGAGAAGGAGCAGGTGACTCAGCTGCAGAAGAAGCTCCAGTACGTCGTGAGGGAGGAGGAGAGACGCGTGGCCCAACAGAATCAGGCCTTTCAACAGATCCACCGCAGATCAGCCCGACTCGACTCCAGCACCGACCCGCAGATTTTGGACATCATCGACGAGTACGAGTCCCAACTGCAACATCTACGAAACGAACTGAAATTATATAAAAGTAGCTCTGGAGAGAAGGACTCCTCAAACTCCCAAAAGAACTCCGCCGCCGACACGTCTTCCAGCCATAAGGCCCTTTTAAAGTCGTACCAGGAGCAGCTGAAGGAGACCAAAGCTCAGCGAGAAGAACTCAGGAGCGAAATCCAGCGCTTAAAAGAAGATCTGGAGTCCAGGTTGATGGTGGACTTTTGTAGCCGTGACTATTGTTATGCATTTATAGTTGGTGACGTTTTTAATGTTGCACATTTTAGACccaccacaaaagaaatgaaaacctGCAAACAGCAGTTGAGACGCATGGATCGAATCATTCAGCAGAGCAACATCAGATCATCTGAAGCCCTCAAAACGCTGGACTCACGAGAGACGCTAAATACAGATAACACAGGAATCCAGCACCTAGATGCCTTGAACTGCAAGAGACTCCTTATAAGTGTTTGTAAGGAGCTCAATGTGCAAGATGTCAGTCACCTCACTTCTGCTGTGAAGCTTCAATGCAAACAAGCCGAATCTGCCTTCAAGCTGGAGAAGATCCTGCATGACATCACCACAGTCCTGACCAATCCCAGGGCTCCTTTGGGTTTGCTGAGACAGCGTACGCAAACCAACCTCAAACTCAGCAGGGAGGCGGAGTTTGACCTGATTGcttccaccctggagatttGGAGCCAGCAGCTAACCTCTCTAGCAGATCTTCACCGTGCCCTTGTCCGATTGGTGAAGAGGTTGTTGCCATGGCAGCCAGAGGGCAGCATCACCACACCTTCGGGTCCTGTGCGGGTGGAAGATTTGCTGCTGATCGTTGACACTCTGCTCGATGAGACGGCATCAGATGACCAGGTTCTGCGGAGCCCCACCAGACACACCCTGGAGTCCATGGTTGCCCACTTCCAGAAGCTCTTTGATGCTCCATCGCTGACAGGAATCTATCCTCGCATGAACGAGGTCTACACCAAGCTGGGCGAGATGAACAACGCCATGAGAAACCTCAGAGATCTTCTGGACTTGGATGATAAAGCGCCCCCTAGCGAGGTCGTCAACAAGGTAGCTGCGGTCGTGATGCAGTCAGGAAGCGTAGCGGGTCAGGAGCTCCACAGCCTTCTGGAAAGCAGTGACATTGAAAGCATCATCTTAAAGCTGAAGGATCATGAGGAATTCTTCCCAGTTTTCCACACATTCATCCTGGAACTTCTGCAAACACTGGACGTCCCGACTCTAGACGACGTTTTGCCGACGGTACGTTCTCTCAAAGGCTGCTGATGTTTTTGTAAAGCACCATGTGTATTCACTTCGGAAATTTAAACGCGTTTAttgtattgttctttttttgttgttgtttaaataaattagcatttctgc

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222664 lncRNA downstream 56131 6515565 ~ 6659352 (-) False G150440
TU222687 lncRNA downstream 105855 6607789 ~ 6609628 (-) True G150456
TU222668 lncRNA downstream 108929 6603055 ~ 6606554 (-) True G150442
TU222684 lncRNA downstream 115950 6597904 ~ 6599533 (-) True G150453
TU222491 lncRNA downstream 328716 6384156 ~ 6386767 (-) True G150325
TU222719 lncRNA upstream 70480 6799163 ~ 6805440 (-) True G150472
TU222714 lncRNA upstream 93520 6822203 ~ 6939000 (-) False glsa
TU222747 lncRNA upstream 142969 6871652 ~ 6873176 (-) False mfsd6a
TU222748 lncRNA upstream 157866 6886549 ~ 6887136 (-) True G150488
TU222750 lncRNA upstream 170560 6899243 ~ 6902815 (-) True G150490
XM_043222393.1 mRNA downstream 137056 6524786 ~ 6578427 (-) False zranb3
XM_043222394.1 mRNA downstream 137056 6524786 ~ 6578427 (-) False zranb3
XM_043222395.1 mRNA downstream 137056 6524786 ~ 6578427 (-) True zranb3
XM_043222396.1 mRNA downstream 137060 6524786 ~ 6578423 (-) False zranb3
XM_043222397.1 mRNA downstream 143107 6524786 ~ 6572376 (-) False zranb3
XM_043223466.1 mRNA upstream 1099 6729782 ~ 6755792 (-) True adarb1a
XM_043223468.1 mRNA upstream 1099 6729782 ~ 6755790 (-) False adarb1a
XM_043223467.1 mRNA upstream 1099 6729782 ~ 6753557 (-) False adarb1a
XM_043223464.1 mRNA upstream 1099 6729782 ~ 6746380 (-) False adarb1a
XM_043223465.1 mRNA upstream 1099 6729782 ~ 6746374 (-) False adarb1a
TU222663 other downstream 56131 6617575 ~ 6659352 (-) True G150440
TU222327 other downstream 429906 6282456 ~ 6285577 (-) True gcga
TU222410 other downstream 478618 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 722760 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 854166 5859347 ~ 5861317 (-) False timm13
TU222738 other upstream 126087 6854770 ~ 6856863 (-) False nab1a
TU222739 other upstream 126087 6854770 ~ 6889657 (-) False nab1a
TU222740 other upstream 126087 6854770 ~ 6881469 (-) False nab1a
TU222746 other upstream 139160 6867843 ~ 6869546 (-) False mfsd6a
TU222752 other upstream 177317 6906000 ~ 6913558 (-) True G150492

Expression Profile