RNA id: TU222714


Basic Information

Item Value
RNA id TU222714
length 1967
lncRNA type read_through
GC content 0.32
exon number 2
gene id glsa
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6822203 ~ 6939000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaatgacaagtaaaatttgaaattaaacagacaaaaatgcaCTGGAATTGCTCGCAACGCAGTCGAACTTGTCCCGTCAGTTGGGTCCTTCGGTGAAATTACTTTATGAACGGTTAGTTTTATGTCTGTAAACACGTATCCAGAAAAGCACACTGATTGTTCTAATGTACAGTACGGACGACAGAGAGGCGCGCGTATACTTGAAAAACCTCCAAAGTTGATCTAAACTATGTGAATATTTTCTAGTGGGACACTATGGTTGAAGtattgtaaatgtgttttgtaatgagtgtgtgtgagtgtggaaaatttgttatatataggaaaaaaaccaaaaaatcgAAGCAACTCAACAAAGAGACTCGACGATACAAACAAAAGTAGGTCACTGATCGTATTCAACTTTGTACGTTTCTTTGTCGCGTTTTAGTCCATTTTTGTCGCATTGTGTAATTTCTTGTTTTTGCGGAGAAAGGAGTTACGagttttttctgcatttgtttattactgCTATGAATGTATCGCATTGTCGTCCTTGTTGTGATATTTCCTTTcgatttgcttttatttaactatGCTATACTGTGGATGTTCtagatttgtttgcatttaatgtCAAAGAAAATGATCGATATATTCCACACAAGAAATGCtagataaaaacaataaaggcTTTGAACATACATAGCATTTTGGTATAAATTTTTCCTATCTTATAGCTGTACATGCATCAGACGGATATCCATTAAATGAAtatctcaaatatatataatttggcAATTTTTATCtggtttttaaacatttttcacacGTTTGTATACAGTACCATTTCGTTCGCCGATGTGTCATTTGCGTTTTCTTGGTCTGTGCCGAAAGTTTCTAAGGTGCAGATTTAAGTCATTTCAAACAAGATGGTTTTCCCCAATAATAACTTTCTATCGTGTCCAAAACGAATAAGACAAAAGCATTTTTCCCTGTAATTTAACACAGTAGCGCAATCCAGTGCAAAAAGTGAGAAATGACAACATAAACTATATAAAGTGAACATAACACTAACAGAGCACCAGCAAGTTAAGGAGAATATCAAGAAGACCGGACatactgggttttttttcacatatttggAAACTGGAAATTAACCTCTAACAGCTTAAAAGGTTTTGTCAGACCTGAACTCCTACATCTCGTAGCTCTTTCTGGAGTTATCTTTGAGGGCGTTTTATCCCAAAGAAacttaaacattaaaatctaaaacttgctttcagaaaacaaagcctATTTTAGGACCAATATTTTTGTTGAGgacattgttttttgtttgttcccattattttcataatgtatttttattactaatagtcatttctttattacagtaaaattccCGTACTACAGTAATTTActgattttaatacaaaaaaaaaaaacaagtcagtgtgacttatgtaattttttaaaaatatattttgttcatattaacataaataaaattttcgATTGCTTGCATAATGTTAgtcttataaaaaaatcttattagtCCTAAAAATaggtttaattttctttacataaaaaaaaaaattgtgaaattttatcCATCTAGCTTTTTTGttcactttcttcttctctatTACTTGGCATCTGAGGAAATGAAGTGCCGTTCGTACACGACTTTCCTGGCTAAAACATTTTCGAGAACAAGTGCTGTGGTAACAGTAGCATCGCTATGAGGTTAATTCGATCTATTTGGTTGTCTTTATGCTATAGTTGACAGCATATACAGTGTTTTTCAAATAACGTTAGCATGAAAAAGAAAGGATGGCTAAACCAAATAGCTAAACCTCGACTAGATGTTCCTCTTTCGTTTGCGctattacagaaaaaactgaataattaaacatttcaatttttttttttttttttttttttttttttttttggcatcatCTGTCCACTTAAGAGAGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222719 lncRNA downstream 16763 6799163 ~ 6805440 (-) True G150472
TU222708 lncRNA downstream 106254 6714794 ~ 6715949 (-) False cep70
TU222664 lncRNA downstream 162851 6515565 ~ 6659352 (-) False G150440
TU222754 lncRNA upstream 618 6939618 ~ 6940626 (-) True G150494
TU222764 lncRNA upstream 63960 7002960 ~ 7004118 (-) True G150503
TU222802 lncRNA upstream 66056 7005056 ~ 7005447 (-) True G150538
TU222805 lncRNA upstream 81763 7020763 ~ 7021683 (-) False LOC122327113
TU222806 lncRNA upstream 83401 7022401 ~ 7022697 (-) True G150542
XM_043223046.1 mRNA downstream 25118 6791674 ~ 6797085 (-) True cnot9
XM_043222330.1 mRNA downstream 32674 6775322 ~ 6789529 (-) True plcd4a
XM_043222221.1 mRNA downstream 47506 6758285 ~ 6774697 (-) True slx9
XM_043223464.1 mRNA downstream 75823 6729782 ~ 6746380 (-) False adarb1a
XM_043222299.1 mRNA upstream 23514 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA upstream 23514 6962514 ~ 6971958 (-) True LOC122327116
XM_043222297.1 mRNA upstream 47565 6986565 ~ 6994634 (-) True LOC122327115
XM_043222301.1 mRNA upstream 58908 6997908 ~ 7002547 (-) True LOC122327118
XM_043222295.1 mRNA upstream 81754 7020754 ~ 7055562 (-) True LOC122327113
TU222663 other downstream 162851 6617575 ~ 6659352 (-) True G150440
TU222327 other downstream 536626 6282456 ~ 6285577 (-) True gcga
TU222410 other downstream 585338 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 829480 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 960886 5859347 ~ 5861317 (-) False timm13
TU222808 other upstream 91307 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 670856 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 670856 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1945121 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 2074548 9013548 ~ 9171931 (-) False nfia

Expression Profile