RNA id: XM_043222290.1


Basic Information

Item Value
RNA id XM_043222290.1
length 2431
RNA type mRNA
GC content 0.51
exon number 15
gene id nab1a
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6846890 ~ 6889657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGTTCAggtcttctctctctttctcgctcggTATTCCGTCCCACGCGCGGCACCGCCCACGCGAGGATTTGCGTCAAGCCGGCGCGTGGGAGTGAGAGAGCAATGCAGCTTACATCGGAATATCCCCgcacaagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTCGCGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCAGTCGCGCGCACCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGGCCAGGGTGCTCCCCGCTGCAAGGCGCTAGCGAGAGTCGTTTCTGGGGAAGCGAGAGCGAGCACAGCCTTTCTCCATCTGGAGCTTTCCCGTGTTCACCCCACGATGCTCTTGGCCTCGATTCTGCCGCCGTCCAGTGCGTGATGGAATGCGTAGAGCGACTAGCCCAGACGTTGCCCAAGAGCGACCCCACAGAAATCAAAGAACACATTCGCGCCAACAAGAAGCTCAGCAAGATGATCGGCCACATCTGCGAGATGAGCGAAGACAGTCCGCAAAAGGAGGTGGAGATTCGGAAATACAGCGCCATCTACGGAAGGTTCGATTCCAAGACGGACGGCCGGCAGCTTACGATGCACGAGCTAACGGTCAACGAAGCATCCGCTCAGCTGTGTATGAAAGATCTGTCGCTGCTGACCCGAAGAGATGAACTTTTCTCGCTGTCCAGGCAGATTTCACGGGAAGTTACCTACAAATACACCCGCAGGAGGTCCCACTGCGGTGATGACGATGAACCGTCTCCCAAGAGGATCAAATCTGAAGATGGTGTGTACGATTTGCAGGAGGCTCTTCATGTTCTTCACACACGTCAAGAAGAAACGGTGAGAGAACAGCTTGCAATGGCCAAATCTAAAGGAGAGGAGACGATCAGACATAGTCTACAGGTACAGCTGGACTCTCTGTTGGCCAAGCAGGTGGAGCTTTTGCGTGACGCTGCCGTCCAAGAGAGACTGAAATCGTTGGACTGGCGGATTCCAACAGCAGCGCTGAAATACCTCGCTCCGACTGCTCAACACTGCAACAGCGGCCTCTCGAATCTCTCTGGCGAGAGACCCCTGAACCTGCGCCTGACAGATGTCCCGTTGGGTAGGCAATTAGCCAATGAGCTCAAACGACATCACAAGCAGAACGCAGAGGAACGGCATCATCACCAACAACAGACGTCCGAAGAGAGAAGGACGGCGGCCACAGaaaaCGGGTCTCAGAAGGAGCCTGGGCTCCTGGAGAAGAAAACCATCAAATCAGAACCAGAGGACTCCAGATAACGTCTTCGGCCTGAAAGTGAAAGCTTGCGTTTTGTTTAGTACTGAAACAGTGTGGCCTTAACAACTGTAAATGCCTAGAGATCCATTTatttagagttttatttttatttctaattttagaacGAAAAACACGAACGTctcgtggtcgttgtacgcacAGAAATCGTCTAAGACCGTATTCGTGCGTCGTTTTTGTACAtagtctgtgtttgtttttccgaTTGCATGTCGCTACTcgtgactatttttatttaaactattcgTTAATCAACGGAAACACTGGAGTTTCGTGGAAAACCTTTGTGCGGTCCTTAGATTAGTCAAGGTTAAACGACGACATGCATCTGTTCGTATCGGTTTGTCGTCGAGGATCAACTTAACGTAAAAGAATACTGAATATGTAGAACTAGCTTTGCGTGTTTTTTGCGGTTTTGCGTCAGTTTAGATATTAGCGCtaggaaaaaaaacgtttgtgtATTTGTTACCAGCTCTAGCCTTATTCTCATCGTCCGATATCGTGTATCTCGCTGTCGTTAGACGTTAACCGTTACATTGTGACTGTGATTcctcggaaaaaaaaaaaagttcgcaaacttttttttttcccaaatgtgGCCGTTTTGTTAGTTAGCTGTGCTAATCTGTCGTTCTGGTCTCTTCTATGCACATTTGTTGCGTGTTACAGTCTTTATCTTGTCTTTGTAAAATCGTTCTAGAAATAAAACCGAACTgg

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222719 lncRNA downstream 41450 6799163 ~ 6805440 (-) True G150472
TU222708 lncRNA downstream 130941 6714794 ~ 6715949 (-) False cep70
TU222687 lncRNA downstream 237262 6607789 ~ 6609628 (-) True G150456
TU222668 lncRNA downstream 240336 6603055 ~ 6606554 (-) True G150442
TU222684 lncRNA downstream 247357 6597904 ~ 6599533 (-) True G150453
TU222747 lncRNA upstream 14754 6871652 ~ 6873176 (-) False mfsd6a
TU222748 lncRNA upstream 29651 6886549 ~ 6887136 (-) True G150488
TU222750 lncRNA upstream 42345 6899243 ~ 6902815 (-) True G150490
TU222754 lncRNA upstream 82720 6939618 ~ 6940626 (-) True G150494
TU222764 lncRNA upstream 146062 7002960 ~ 7004118 (-) True G150503
XM_043223491.1 mRNA downstream 4045 6823485 ~ 6842845 (-) False glsa
XM_043223490.1 mRNA downstream 4045 6823485 ~ 6842845 (-) True glsa
XM_043223492.1 mRNA downstream 4045 6828460 ~ 6842845 (-) False glsa
XM_043223493.1 mRNA downstream 8530 6823485 ~ 6838360 (-) False glsa
XM_043223495.1 mRNA downstream 11507 6823485 ~ 6835383 (-) False glsa
XM_043223880.1 mRNA upstream 8325 6865223 ~ 6873200 (-) True mfsd6a
XM_043223881.1 mRNA upstream 17561 6874459 ~ 6880468 (-) True LOC122328175
XM_043222300.1 mRNA upstream 70066 6926964 ~ 6929270 (-) True LOC122327117
XM_043223882.1 mRNA upstream 72252 6929150 ~ 6934573 (-) True LOC122328177
XM_043222299.1 mRNA upstream 105616 6962514 ~ 6971960 (-) False LOC122327116
TU222663 other downstream 187538 6617575 ~ 6659352 (-) True G150440
TU222327 other downstream 561313 6282456 ~ 6285577 (-) True gcga
TU222410 other downstream 610025 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 854167 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 985573 5859347 ~ 5861317 (-) False timm13
TU222746 other upstream 10945 6867843 ~ 6869546 (-) False mfsd6a
TU222752 other upstream 49102 6906000 ~ 6913558 (-) True G150492
TU222808 other upstream 173409 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 752958 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 752958 7609856 ~ 7618398 (-) True LOC122327776

Expression Profile